Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N15
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0338 + 2522698-2523213 30 0.64
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 0.85
01_07_0082 - 40965947-40967023 29 1.5
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 28 2.6
04_01_0346 - 4536487-4536543,4536714-4536738,4537012-4537285,453... 28 2.6
12_01_0363 + 2750982-2751479 27 4.5
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 27 4.5
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 27 4.5
02_04_0629 + 24597370-24597789 27 6.0
01_06_0329 + 28515740-28516526,28516597-28516631 27 6.0
01_06_0326 - 28495621-28495655,28495726-28496512 27 6.0
01_05_0680 - 24238840-24241242 27 6.0
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 26 7.9
>11_01_0338 + 2522698-2523213
Length = 171
Score = 29.9 bits (64), Expect = 0.64
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 207 REAPVPMPTEAALAQRLESELRAAKGASELATAEVLVPAELLAR 338
+ APV +P+EAA A+R + AA+ E A ++ P E++AR
Sbjct: 94 KSAPVRIPSEAAAARR--GVMWAAQAGGEDGEAAMVPPHEIVAR 135
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 119 FTYIVHSIIPYKDNVMSSATGTYTRKISQVSFVLRK 12
+T ++ SI+PY N+ S+TG + +SFV+R+
Sbjct: 148 WTNVIFSIVPYPKNLTLSSTGLSILRSYFMSFVVRQ 183
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 174 TSEKAWNGPTWREAPVPMPTEAALAQRLESELRAAKGASELATAEVLVP-AELLARA 341
T P W AP+ A+ A L LRA + + EV +P +ELL+ A
Sbjct: 45 TDRAGGRNPAWNAAPLRFTVPASGAGSLHVLLRAERALGDRDVGEVHIPLSELLSGA 101
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 87 IRYYRVYNISKNLENMEILPVTNQFNVGFTSEKAWNG 197
I+ YRV N+ +N + L V + G + + WNG
Sbjct: 48 IQRYRVLNLPENFPGLYELGVARASDEGIRAARRWNG 84
>04_01_0346 -
4536487-4536543,4536714-4536738,4537012-4537285,
4538206-4538236,4539101-4539176,4539244-4539308,
4539766-4539848,4540489-4541519,4543209-4543507
Length = 646
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 63 SGTHYVIFIRYYRVYNISKNLENMEILPVTNQFNVGFTSEKAWNGPT 203
SG IF YY +SKN E++ V+ FN GF N T
Sbjct: 515 SGDEARIFALYYSRVYVSKNSEDIAFF-VSKNFNTGFGVASTSNNGT 560
>12_01_0363 + 2750982-2751479
Length = 165
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 207 REAPVPMPTEAALAQRLESELRAAK---GASELATAEVLVPAELLAR 338
R APV +P+EAA A AA+ G + A V+ P E++AR
Sbjct: 83 RSAPVRIPSEAAAAAGRRGRWAAAQSSVGGEDGDAAMVVPPHEVVAR 129
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 198 PTWREAPVPMPTEAALAQRLESELRAAKGASELATAEVL----VPAELLARASMQ 350
P REAP P AA+A+R R A+ A A+ + PAE A A+ +
Sbjct: 177 PPRREAPQPQVANAAVAERRPLREREEAAAAAAAAAKRIHDHHTPAESKAEAASE 231
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 31 TCDIFLV*VPVAELITLSLYGIIECTI*VKIW 126
+C I+L L+TLSLY CT+ +W
Sbjct: 687 SCPIWLGSESYTNLVTLSLYHFKSCTVVPSLW 718
>02_04_0629 + 24597370-24597789
Length = 139
Score = 26.6 bits (56), Expect = 6.0
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = +1
Query: 148 SRTSLTSDSPVKKRGMGRHGEKXXXXXXXXXXWLRGSRVNYERPKEPASWQPPKS*YQRS 327
SRT P R R GE+ RV+ P+EPAS + + +RS
Sbjct: 44 SRTVACGRPPGDGRKARRDGERTCPCGRRRGAAATAGRVHLAGPQEPASREEWRGQERRS 103
Query: 328 YLQGRP 345
GRP
Sbjct: 104 RAGGRP 109
>01_06_0329 + 28515740-28516526,28516597-28516631
Length = 273
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 CRSRTSL-TSDSPVKKRGMGRHGEKXXXXXXXXXXWLRGSRVNYE 273
C+S +SL +S S VK G G E W+ G +YE
Sbjct: 132 CKSNSSLLSSTSVVKLTGCGAGPEHIGSSYVFLDGWITGEAYDYE 176
>01_06_0326 - 28495621-28495655,28495726-28496512
Length = 273
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 CRSRTSL-TSDSPVKKRGMGRHGEKXXXXXXXXXXWLRGSRVNYE 273
C+S +SL +S S VK G G E W+ G +YE
Sbjct: 132 CKSNSSLLSSTSVVKLTGCGAGPEHIGSSYVFLDGWITGEAYDYE 176
>01_05_0680 - 24238840-24241242
Length = 800
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 99 RVYNISKNLENMEILPVTNQFNV---GFTSEKAW 191
+ Y + + + + +LP TN+FN+ G ++K W
Sbjct: 335 KAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLW 368
>11_04_0071 -
13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 169 PTLNWFVTGSISMFSKFLLILYTL*YRIKIT**VPLPELILEKYHKSLLYCE 14
PTL + + +S FSK + + Y I PLPE+I + YH +L E
Sbjct: 626 PTLTYSIDYLLSNFSKLIHLRYL--ELISSGPGGPLPEVICQLYHLQVLDVE 675
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,179,460
Number of Sequences: 37544
Number of extensions: 161568
Number of successful extensions: 465
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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