Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N15
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-11|CAJ80824.1|  462|Caenorhabditis elegans Hypothetical...    30   0.44 
AL032632-10|CAA21581.1|  475|Caenorhabditis elegans Hypothetical...    30   0.44 
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    27   3.1  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine rece...    26   9.5  

>AL032632-11|CAJ80824.1|  462|Caenorhabditis elegans Hypothetical
           protein Y11D7A.3b protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -2

Query: 217 GASLHVGPFHAFSLVNPTL------NWFVTGSISMFSKFLLILYTL 98
           GA+ H+  F  FSL+ P+L       WF+T + ++F+ + L  + L
Sbjct: 65  GAAFHLSAFAVFSLITPSLQHFVPSKWFLTLASALFAVYYLGFFQL 110


>AL032632-10|CAA21581.1|  475|Caenorhabditis elegans Hypothetical
           protein Y11D7A.3a protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -2

Query: 217 GASLHVGPFHAFSLVNPTL------NWFVTGSISMFSKFLLILYTL 98
           GA+ H+  F  FSL+ P+L       WF+T + ++F+ + L  + L
Sbjct: 78  GAAFHLSAFAVFSLITPSLQHFVPSKWFLTLASALFAVYYLGFFQL 123


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 90  RYYRVYNISKNLENMEILPVTNQ 158
           RY R YNIS+N  + E+LP   Q
Sbjct: 509 RYNRKYNISQNWYHREMLPFVQQ 531


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 90  RYYRVYNISKNLENMEILPVTNQ 158
           RY R YNIS+N  + E+LP   Q
Sbjct: 509 RYNRKYNISQNWYHREMLPFVQQ 531


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 141 LPVTNQFNVGFTSEKAWNGPTWREAPVPMPTEAALAQRLESELRAA 278
           LP   +     +++ A+ GPTW E    M  E     RL +E RAA
Sbjct: 792 LPSQEEIEKAASTKNAYQGPTWAETIAIMKEE----DRLWNEPRAA 833


>U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein138 protein.
          Length = 369

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 185 FFTGESDVKLVRDRQYLHVFQIFTYIVHSIIP 90
           ++T  SD+    D  YL +F I   +V +IIP
Sbjct: 199 YYTVISDIFADNDGYYLKIFSIVNGLVSNIIP 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,610
Number of Sequences: 27780
Number of extensions: 133637
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)