Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N14
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    78   7e-16
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   3.9  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   6.8  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   6.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   9.0  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 77.8 bits (183), Expect = 7e-16
 Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
 Frame = +2

Query: 59  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 235
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 236 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGDEEEDAESARVREER 415
           A+Y  A     ++ VS               +        LFGS DEEED E+ R++ ER
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGS-DEEEDPEAERIKAER 111

Query: 416 LKAYADKKS 442
           +  Y  KK+
Sbjct: 112 VAEYNKKKA 120


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 61  HFSIRNLIYSSKPHGPAT 8
           H  I +L+Y + PHGP +
Sbjct: 262 HHKIEDLVYHAYPHGPCS 279


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 227 CTTSKHEVGWQQVLCRLAQIL*YQLEKECIQTHNFFQLN 111
           C+T K E   +   CRL  I   + +  CI  +N   LN
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLN 198


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
          L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 67 QCHFSIRNLIYSSKPHGPAT 8
          Q H S+RN I SSKP   +T
Sbjct: 17 QFHISVRNSIQSSKPLSNST 36


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 228 ATSHRTPLLNAKPGQRELAH*QLELNPRPLLHPP 329
           AT+  TP   A P   E  + +   +P P+  PP
Sbjct: 118 ATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 291 VNGLTPSDQVLRSAGVYDAMWLY 223
           V+G+T S+QV     V DAM  Y
Sbjct: 181 VSGITKSEQVQHPQAVLDAMAFY 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,759
Number of Sequences: 5004
Number of extensions: 26089
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)