Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N13
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591...    31   0.27 
03_06_0602 - 34995080-34995163,34995304-34995395,34995505-349955...    29   1.1  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   5.7  
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    27   5.7  
06_01_0045 + 420300-420530,422730-423006,423974-424014                 26   7.6  

>07_01_0769 +
           5908942-5908946,5909085-5909666,5910370-5910429,
           5910635-5910674,5910767-5910860,5911582-5911952
          Length = 383

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 148 KLLIIITLKMEEQTIPELSPFDPTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQ 306
           K L+   +  E QTI + +     KE + YLK   KTSK  EG +K +  K Q
Sbjct: 190 KRLVDANVATEIQTIVQDAKGKFEKERQNYLKVLSKTSKECEGLLKNEYTKFQ 242


>03_06_0602 -
           34995080-34995163,34995304-34995395,34995505-34995564,
           34995900-34995993,34996086-34996125,34996334-34996393,
           34997377-34997507
          Length = 186

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 178 EEQTIPELSPFDPTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQ 306
           E QTI + +     KE + YLK   KTSK  EG +K +  K Q
Sbjct: 48  EIQTIVQDAKGKFEKERQNYLKVLSKTSKECEGLLKNEYTKFQ 90


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 80   ESYRNE*FIITEVQFKSLVRFLS 12
            E +RNE  +I ++Q ++LVR LS
Sbjct: 2179 EEFRNEVILIAKLQHRNLVRLLS 2201


>08_01_0704 +
           6219530-6219609,6221595-6222243,6222339-6222437,
           6222521-6222616,6222750-6222848,6222929-6223027,
           6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 145 PKLLII-ITLKMEEQTIPELSPFDPTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQERKES 321
           P+L  + IT  +  +   EL   +   E+++  +     S+ ++ GI T+    QER ++
Sbjct: 532 PRLASLKITHDLNTEPEDELIGVNLVNEVQSTKENPTDKSRLNQAGISTEMTSVQERADN 591

Query: 322 HKLSSK 339
             LSS+
Sbjct: 592 QLLSSQ 597


>06_01_0045 + 420300-420530,422730-423006,423974-424014
          Length = 182

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   GSPGLRNRTRLLNCTSVIINY 63
           GSP ++ R R +NC  V + Y
Sbjct: 162 GSPAVQGRVRCINCIGVAVAY 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,847,455
Number of Sequences: 37544
Number of extensions: 121292
Number of successful extensions: 322
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)