Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N13
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical pr...    34   0.025
Z46791-6|CAA86759.1|  395|Caenorhabditis elegans Hypothetical pr...    29   0.72 
U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    26   6.7  
AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical ...    26   6.7  
Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical p...    26   8.9  
Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical pr...    26   8.9  
Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U58749-9|AAK18874.1|  349|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical
           protein ZC449.5 protein.
          Length = 493

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 211 DPTKEIKTYLKCHKKTS-KTSEGGIKTDEVKTQERKESHKLSSKNAVK 351
           D ++E  T +K HKK S KT++    T+E  + ++ E  K  SK AVK
Sbjct: 83  DDSEEETTTVKSHKKKSTKTTDAPKTTEEPASTKKSEKKKTESKKAVK 130


>Z46791-6|CAA86759.1|  395|Caenorhabditis elegans Hypothetical
           protein C09G5.7 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +1

Query: 214 PTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQERKESHKLSSKNAVKY 354
           P KE+K     HK  S T     KT   K + RK+S+ LSS N  KY
Sbjct: 44  PKKEVKKIRSVHKVESVT-----KTKSAKLR-RKKSYSLSSDNESKY 84


>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 193 PELSPFDPTKEIKTYLKCHKKTSKTS----EGGIKTDEVKTQERKESHKLSSKNAV 348
           P+L+PF  +KE   +L    + S       EGG  +D   T+E    H+L  K+++
Sbjct: 289 PQLAPFFDSKEKNDHLAAMYEVSDGEGDHGEGGWNSDGDNTKENVARHRLIQKDSI 344


>U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK354.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 250 KKTSKTSEGGIKTDEVKTQERKESHKLSSKNAVK 351
           K+ S T     K+DE KT+E+K   K + K+  K
Sbjct: 278 KEKSATKSEDKKSDEKKTEEKKSDEKKNEKSEEK 311


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 187 TIPELSPFDPTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQ---ERKESHKLSSKNAVKYL 357
           T+   +P + TK   +Y K  +K SKT +   K+D        +R E +  +S N +  L
Sbjct: 445 TLVNTTPTEQTKPTLSYAKIVEKFSKTDQQPAKSDNSSPSPRAQRLEQNLATSANTIPCL 504


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 148  KLLIIITLKMEEQTIPELSPFDPTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQER--KES 321
            K+  + T K E+ T P      PT  +K  +        TSE   KT E K QER  K+S
Sbjct: 903  KVSQVTTKKEEDSTQPA-----PTLTVKKNVVKQTAEKSTSEKEHKTTENKEQERIIKKS 957

Query: 322  HKLSSKNAVK 351
              L  K+  +
Sbjct: 958  STLKDKDVAQ 967


>AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.6 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 340 FCCSIYDFPFFPVFSLHQFLYHL 272
           FC SI+ F    +FS H FL+ L
Sbjct: 30  FCFSIFPFSVPDIFSSHSFLHPL 52


>Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical
           protein T19B10.10 protein.
          Length = 303

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 137 YFTVLRLCFDFIYTSYITYESY 72
           ++  ++L F  IYTSYIT  S+
Sbjct: 123 FYLCIQLSFPIIYTSYITVISF 144


>Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical
           protein F57B7.1b protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 188 VCSSIFKVIMINNLGKV--YFTVLRLCFDFIYTSYITYESYRNE 63
           +CS  F++ + NNLG +   F++   C  FI    ++ + +RNE
Sbjct: 331 MCSEEFRIYIYNNLGDILDLFSLCGSCCSFIIYCSMSGQ-FRNE 373


>Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical
           protein F57B7.1a protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 188 VCSSIFKVIMINNLGKV--YFTVLRLCFDFIYTSYITYESYRNE 63
           +CS  F++ + NNLG +   F++   C  FI    ++ + +RNE
Sbjct: 331 MCSEEFRIYIYNNLGDILDLFSLCGSCCSFIIYCSMSGQ-FRNE 373


>U58749-9|AAK18874.1|  349|Caenorhabditis elegans Hypothetical
           protein B0496.2 protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 160 IITLKMEEQTIPELS--PFDPTKEIKTYLKCHKKTSKTSEGGIKTDEVKTQERKES 321
           +I +  E +  P+L    FDP  +   Y K + K ++ S  G+  D+    E+K S
Sbjct: 78  VININKEIEFTPKLKIMVFDPIDQGCRYNKVNLKITRKSSVGVAVDKFIDFEKKNS 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,484,891
Number of Sequences: 27780
Number of extensions: 132970
Number of successful extensions: 459
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)