Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N13
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 128 VLRLCFDFIYTSYITYESYRNE*FIITEVQFKSLV 24
           +++ CF    T+Y+T E        IT++Q  +LV
Sbjct: 199 LVQACFQQAQTTYVTKEVATGTASEITQIQEATLV 233



 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 194 GIVCSSIFKVIMINNL 147
           GI+C    K++ INNL
Sbjct: 290 GIMCLIAGKIMSINNL 305


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 163 ITLKMEEQTIPELSPFDPTKEIKTY 237
           IT+K +++   E    DP +E +TY
Sbjct: 153 ITMKSKKEQNAEEDIVDPVEENETY 177


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 295  LHQFLYHLHS 266
            LH F+YH H+
Sbjct: 1737 LHSFMYHEHA 1746


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 295  LHQFLYHLHS 266
            LH F+YH H+
Sbjct: 1733 LHSFMYHEHA 1742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,338
Number of Sequences: 438
Number of extensions: 1736
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)