Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N12
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...   116   1e-27
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    43   2e-05
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.24 
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   2.2  
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    25   3.9  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   6.8  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    24   9.0  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    24   9.0  

>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score =  116 bits (280), Expect = 1e-27
 Identities = 51/79 (64%), Positives = 68/79 (86%)
 Frame = +3

Query: 204 GPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCN 383
           GP RIEKA + LIQF +SPPK DM++ V+V+DY  MD++LKEER Y+LN+ K+I+KAG N
Sbjct: 226 GPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYLLNMCKKIKKAGAN 285

Query: 384 VLLVQKSILRDALSDLAIH 440
           V+L+QKSILRDA++DLA+H
Sbjct: 286 VILIQKSILRDAVNDLALH 304



 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 27/36 (75%)
 Frame = +1

Query: 85  RCGSKSDLRDVKVIERIGGTVEDTELIPGLVIAHRA 192
           R  +  DL+D+++++++GG ++DTELIPGL +   A
Sbjct: 185 RVATNVDLKDIRIVKKLGGIIDDTELIPGLALTQTA 220


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = +3

Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
           PHRIE AK+ ++     PPK    H + ++  +  + +   E+     ++K ++ AG N+
Sbjct: 242 PHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANL 301

Query: 387 LLVQ 398
           ++ Q
Sbjct: 302 VICQ 305



 Score = 30.7 bits (66), Expect = 0.10
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 103 DLRDVKVIERIGGTVEDTELIPGLVIAHRASNVMDLTALRKLKLDLFSSVFHHRK 267
           D   +KV  ++GG+V+DT+L+ G+V+    S+      +   K+ + +  F   K
Sbjct: 207 DFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPK 261


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 85  RCGSKSDLRDVKVIERI-GGTVEDTELIPGLVIAHRASNVMDLTALRKLKLDLFS 246
           R G   D+R    I++I GG+++D  L+ G++ + +AS+     +LR+ ++ L +
Sbjct: 514 RSGDDIDVRSYVKIKKIPGGSIQDCFLVNGVLFSKKASSKSMDRSLRRPRIALLT 568



 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 306 AMDRVLKEERLYILNIVKQIRKAGCNVLLVQKSILRDALSDLAIH 440
           ++D ++ ++  YI+N+V +I     N++  Q  I   AL     H
Sbjct: 582 SLDLIISQQEEYIINLVNRICMLKPNLVFAQGQIPSIALKYFEEH 626


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 412 LKMDFCTKSTLQPAFLICLTIFKIYRRS 329
           LK   C+++T + A ++CLTI    RRS
Sbjct: 37  LKNANCSENTYEQALILCLTIMCEQRRS 64


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 257 TTEN*YGSQCNCFRLCCNGS 316
           T+E+    Q +C R+CCN S
Sbjct: 260 TSESLSSQQMSCLRICCNSS 279


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +1

Query: 67  DGTNCRRCGSKSDLRDVKVIE-RIGGTVEDTELIPGLVIAHRASNVMD---LTALRKLKL 234
           +G N    G+KSD+ D KV+E  +     D+  IP L  + + S  ++   LT  R++K 
Sbjct: 112 EGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKE 171

Query: 235 DLFSSVF 255
            + ++ F
Sbjct: 172 RMGNNTF 178


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 422 KSISQNGFLHQEHITTSFSN 363
           KS+SQ+ ++   H+T ++SN
Sbjct: 795 KSVSQSYYIFVSHVTANYSN 814


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 216 IEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDR 317
           I+K+ VGL+Q  ++  ++D+D  +I+  Y  + R
Sbjct: 132 IQKSLVGLLQVFVARAESDLD--IIMPGYTHLQR 163


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  LYKLSTVMEPIVGGVGARVIFVTLKLLNVLV 139
           L+K  T ++P +   G+RV+ V +K    +V
Sbjct: 546 LFKFGTAVKPKLNAYGSRVVDVPVKAATKIV 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,725
Number of Sequences: 5004
Number of extensions: 36729
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)