Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N12
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 124 2e-29
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 124 2e-29
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 40 0.001
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 40 0.001
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.49
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 31 0.49
AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical ... 29 1.1
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 29 1.5
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 29 1.5
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 29 1.5
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 28 3.5
AL034365-3|CAA22261.1| 563|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 124 bits (300), Expect = 2e-29
Identities = 57/78 (73%), Positives = 69/78 (88%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P RIEKAK+GLIQF ISPPKTDM++ VI++DYA MDR LKEER Y+L I KQI+ AGCNV
Sbjct: 238 PTRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRALKEERQYLLEICKQIKAAGCNV 297
Query: 387 LLVQKSILRDALSDLAIH 440
LL+QKSILRDA+++LA+H
Sbjct: 298 LLIQKSILRDAVNELALH 315
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +1
Query: 94 SKSDLRDVKVIERIGGTVEDTELIPGLVIAHRASNVMDLTALRKLKLDL 240
S +L+ +K+I+++G TVE++ELI G +I + T + K K+ L
Sbjct: 200 SNVNLKMIKIIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGL 248
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 124 bits (300), Expect = 2e-29
Identities = 57/78 (73%), Positives = 69/78 (88%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P RIEKAK+GLIQF ISPPKTDM++ VI++DYA MDR LKEER Y+L I KQI+ AGCNV
Sbjct: 238 PTRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRALKEERQYLLEICKQIKAAGCNV 297
Query: 387 LLVQKSILRDALSDLAIH 440
LL+QKSILRDA+++LA+H
Sbjct: 298 LLIQKSILRDAVNELALH 315
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +1
Query: 94 SKSDLRDVKVIERIGGTVEDTELIPGLVIAHRASNVMDLTALRKLKLDL 240
S +L+ +K+I+++G TVE++ELI G +I + T + K K+ L
Sbjct: 200 SNVNLKMIKIIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGL 248
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P R++ AK+ + F + K + +V+V D A ++ + +EE + +I KAG NV
Sbjct: 229 PLRVQNAKIACLDFSLMKAKMHLGISVVVEDPAKLEAIRREEFDITKRRIDKILKAGANV 288
Query: 387 LLVQKSI 407
+L I
Sbjct: 289 VLTTGGI 295
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P R++ AK+ + F + K + +V+V D A ++ + +EE + +I KAG NV
Sbjct: 229 PLRVQNAKIACLDFSLMKAKMHLGISVVVEDPAKLEAIRREEFDITKRRIDKILKAGANV 288
Query: 387 LLVQKSI 407
+L I
Sbjct: 289 VLTTGGI 295
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 30.7 bits (66), Expect = 0.49
Identities = 13/64 (20%), Positives = 30/64 (46%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P ++ AKV ++ PPK H + ++ + ER +++Q++++G +
Sbjct: 239 PKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDYERETFETMIRQVKESGATL 298
Query: 387 LLVQ 398
+ Q
Sbjct: 299 AICQ 302
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 SLLPFGPIAVQAIDCDGTNCRRCGSKS-DLRDVKVIERIGGTVEDTELIPGLVIAHRASN 198
SL F IAV A+ + SK + +K+ ++GG +EDT L+ G+VI S+
Sbjct: 180 SLRQFAEIAVDAV----LSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSH 235
Query: 199 VMDLTALRKLKLDLFSSVFHHRK 267
L+ K+ + + F K
Sbjct: 236 PQMPKELKNAKVAILTCPFEPPK 258
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 30.7 bits (66), Expect = 0.49
Identities = 13/64 (20%), Positives = 30/64 (46%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P ++ AKV ++ PPK H + ++ + ER +++Q++++G +
Sbjct: 239 PKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDYERETFETMIRQVKESGATL 298
Query: 387 LLVQ 398
+ Q
Sbjct: 299 AICQ 302
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 SLLPFGPIAVQAIDCDGTNCRRCGSKS-DLRDVKVIERIGGTVEDTELIPGLVIAHRASN 198
SL F IAV A+ + SK + +K+ ++GG +EDT L+ G+VI S+
Sbjct: 180 SLRQFAEIAVDAV----LSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSH 235
Query: 199 VMDLTALRKLKLDLFSSVFHHRK 267
L+ K+ + + F K
Sbjct: 236 PQMPKELKNAKVAILTCPFEPPK 258
>Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical
protein C07G2.3b protein.
Length = 336
Score = 30.7 bits (66), Expect = 0.49
Identities = 13/64 (20%), Positives = 30/64 (46%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P ++ AKV ++ PPK H + ++ + ER +++Q++++G +
Sbjct: 33 PKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDYERETFETMIRQVKESGATL 92
Query: 387 LLVQ 398
+ Q
Sbjct: 93 AICQ 96
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 115 VKVIERIGGTVEDTELIPGLVIAHRASNVMDLTALRKLKLDLFSSVFHHRK 267
+K+ ++GG +EDT L+ G+VI S+ L+ K+ + + F K
Sbjct: 2 IKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPK 52
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 30.7 bits (66), Expect = 0.49
Identities = 13/64 (20%), Positives = 30/64 (46%)
Frame = +3
Query: 207 PHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERLYILNIVKQIRKAGCNV 386
P ++ AKV ++ PPK H + ++ + ER +++Q++++G +
Sbjct: 239 PKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDYERETFETMIRQVKESGATL 298
Query: 387 LLVQ 398
+ Q
Sbjct: 299 AICQ 302
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 SLLPFGPIAVQAIDCDGTNCRRCGSKS-DLRDVKVIERIGGTVEDTELIPGLVIAHRASN 198
SL F IAV A+ + SK + +K+ ++GG +EDT L+ G+VI S+
Sbjct: 180 SLRQFAEIAVDAV----LSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSH 235
Query: 199 VMDLTALRKLKLDLFSSVFHHRK 267
L+ K+ + + F K
Sbjct: 236 PQMPKELKNAKVAILTCPFEPPK 258
>AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical
protein Y47D3B.9 protein.
Length = 761
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 61 DCDGTNCRRCGSKSDL-RDVKVIERIGGTVEDTEL 162
+ G R+ +DL +++K+ ERI G+V+DTEL
Sbjct: 657 ESQGAASRKVICLTDLGKEIKITERINGSVKDTEL 691
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 106 LRDVKVIERIGGTVEDTELIPGLVIAHRASNV-MDLTALRKLKLDLFSSVFHHRKLIWIT 282
LR +K+ +I + EL+ L I H A + D ++ + LD VF ++ + W+T
Sbjct: 408 LRLLKMAYKIRN-LPQLELLENLYILHAAYSFDSDQKSILDVILDYTLGVFCNQMMEWMT 466
Query: 283 M*LFPTMLQWIV 318
PT +WI+
Sbjct: 467 TGEIPTSDKWII 478
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 106 LRDVKVIERIGGTVEDTELIPGLVIAHRASNV-MDLTALRKLKLDLFSSVFHHRKLIWIT 282
LR +K+ +I + EL+ L I H A + D ++ + LD VF ++ + W+T
Sbjct: 408 LRLLKMAYKIRN-LPQLELLENLYILHAAYSFDSDQKSILDVILDYTLGVFCNQMMEWMT 466
Query: 283 M*LFPTMLQWIV 318
PT +WI+
Sbjct: 467 TGEIPTSDKWII 478
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 106 LRDVKVIERIGGTVEDTELIPGLVIAHRASNV-MDLTALRKLKLDLFSSVFHHRKLIWIT 282
LR +K+ +I + EL+ L I H A + D ++ + LD VF ++ + W+T
Sbjct: 408 LRLLKMAYKIRN-LPQLELLENLYILHAAYSFDSDQKSILDVILDYTLGVFCNQMMEWMT 466
Query: 283 M*LFPTMLQWIV 318
PT +WI+
Sbjct: 467 TGEIPTSDKWII 478
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 27.9 bits (59), Expect = 3.5
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 166 PGLVIAHRASNVMDLTAL----RKLKLDLFSSVFHHRKLIWITM*LFPTMLQWIVY*KRN 333
P L I NV++LT L + + + F +V +I++ + LFP +L + N
Sbjct: 32 PALAIFGILGNVLNLTVLLNRSMRSRANSFLAVLAFADIIFLFL-LFPNILANYSFFTFN 90
Query: 334 VYIS*ILLNKLEKLVVMCSWCKN 402
Y L+ L+ + +WC +
Sbjct: 91 WYFRWFYLHSKVHLISLANWCSS 113
>AL034365-3|CAA22261.1| 563|Caenorhabditis elegans Hypothetical
protein Y69E1A.3 protein.
Length = 563
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 2 IRHEVVSHFYHLVPLLYKLSTVMEPIVGGVGARVIFVTLKLLNVLVVQWKIQN 160
++HE + FY L + VME + GG R F T + + L + W N
Sbjct: 256 LQHENIVAFYGFASLEEPIMVVMELVTGG-DLRKYFQTTQNIPKLQILWFAMN 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,415
Number of Sequences: 27780
Number of extensions: 209506
Number of successful extensions: 551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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