Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N11
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    28   0.48 
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    26   1.9  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   2.5  
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    25   4.4  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   4.4  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   4.4  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   4.4  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    24   5.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    24   5.9  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    24   5.9  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    24   7.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   7.8  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPE 192
           D  VE+ DAA E  ++ E K+   KKS +KK + P+
Sbjct: 29  DGKVEENDAAEEGASNGEKKKKKKKKS-SKKKKTPQ 63


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 61 KKKIRNKELKLQHVLRT 11
          KKK++NKE+ LQ +L T
Sbjct: 46 KKKLKNKEIDLQAILTT 62


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 91  AVEKQDAAPEEVTSTEVKE--SPIKKSPTKKTEVPESN 198
           AV++    P+   + + KE  S +  SPT+K++  E+N
Sbjct: 538 AVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENN 575


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 117 GCGVLLFNCCVCHYYY*VSKRKLEIKN*NYST 22
           G  VL  N  +C  YY V +   E+ N +Y T
Sbjct: 82  GIDVLWLNSGICQSYYTVMEAPEEVWNAHYQT 113


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 130 STEVKESPI-KKSPTKKTEVPESNGKENG 213
           S+EVKE    +K+  ++ + P+ +G+ENG
Sbjct: 222 SSEVKEEEAGEKTDVEEKKDPDKHGRENG 250


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 116 PKR*LPRKSRNLQLRNLPPKKLKYLRAMV 202
           P+R    + RN + RN P   L YL  M+
Sbjct: 53  PRRRRMNRRRNERSRNFPSNHLSYLEDMI 81


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 88  AAVEKQ-DAAPEEVTSTEVKESPIKKSPTKKTEVPES 195
           A +EK  + APE V  T    SP++ +  K T+V +S
Sbjct: 309 APLEKPVNLAPEVVEPTNAAASPLQLNAPKLTDVDDS 345


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 136 EVKESPIKKSPTKK 177
           E +ESP+K  PTKK
Sbjct: 892 ETRESPMKNKPTKK 905


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 210 VLFTIALRYFSFFGGRFLNWRFLDFRGSH 124
           VLFT+     S F G FL W F  F G++
Sbjct: 322 VLFTVPSNRRSLFIGCFLQW-FQQFSGTN 349


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 106 DAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 207
           D  PE+    + +  P+KK P+KK++  ++N  E
Sbjct: 58  DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFE 90


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 157 KKSPTKKTEVPESNGK 204
           KK+  K+ EVP SNGK
Sbjct: 73  KKTEFKQDEVPNSNGK 88


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 97  EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGT 216
           E +   PEE  + EVK     K+P  +    ES  KE  T
Sbjct: 213 EVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKT 252


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 97  EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 207
           EK     E V S  +     K+SP    E+P ++G +
Sbjct: 582 EKPSKLKETVESKRLSTGVQKQSPAASKEIPVTSGSQ 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.295    0.115    0.295 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,984
Number of Sequences: 5004
Number of extensions: 14180
Number of successful extensions: 37
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.8 bits)