Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N10
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 345 2e-96
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 195 4e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 186 2e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 143 2e-35
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 95 5e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 5e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 2e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 65 7e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.005
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.058
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.23
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 29 0.41
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 0.82
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 2.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 2.9
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 3.8
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 25 5.0
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 6.7
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 8.8
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 8.8
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.8
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 345 bits (848), Expect = 2e-96
Identities = 158/169 (93%), Positives = 164/169 (97%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 184
+DAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDME
Sbjct: 24 DDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 83
Query: 185 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 364
KIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLY
Sbjct: 84 KIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLY 143
Query: 365 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 511
ASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKI
Sbjct: 144 ASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKI 192
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 195 bits (475), Expect = 4e-51
Identities = 86/167 (51%), Positives = 124/167 (74%), Gaps = 1/167 (0%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 184
+D P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME
Sbjct: 28 DDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDME 87
Query: 185 KIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 361
+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+L
Sbjct: 88 EIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLAL 147
Query: 362 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 502
YAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 148 YASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 186 bits (453), Expect = 2e-48
Identities = 86/171 (50%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 178
++ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++
Sbjct: 22 DNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEE 81
Query: 179 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 358
M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLS
Sbjct: 82 MNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLS 141
Query: 359 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 511
LYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +
Sbjct: 142 LYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISL 192
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 143 bits (346), Expect = 2e-35
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 9/151 (5%)
Frame = +2
Query: 86 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 262
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 263 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 418
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 419 TVPIYEGYALPHAILRLDLAGRDLTDYLMKI 511
+P+ EGY + +I + LAGRD+T ++ +
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSL 223
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 95.1 bits (226), Expect = 5e-21
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDM 181
E P+ VF ++V R R + + + + VG++ + G ++ + P E +++NWD M
Sbjct: 43 EKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLM 98
Query: 182 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 361
E++ +TF +L + EHP+ +TE NP R MT+++FE +N P++ I + S
Sbjct: 99 EQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSF 157
Query: 362 YASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 511
Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 158 YHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 88.6 bits (210), Expect = 5e-19
Identities = 54/166 (32%), Positives = 80/166 (48%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 184
ED P+ V PS G + G + Y+ +S G + +K I +G V NWD
Sbjct: 30 EDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVTV 81
Query: 185 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 364
+W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141
Query: 365 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 502
ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 142 ASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.0 bits (196), Expect = 2e-17
Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDD 178
E++P + PS + GV + ++ YV DE Q I + +K +GI+ +W+
Sbjct: 29 EESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWES 82
Query: 179 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 358
W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV
Sbjct: 83 TLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCV 142
Query: 359 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 481
+A+ ++T +++D G + P+ +G + I + LAG
Sbjct: 143 AFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 64.9 bits (151), Expect = 7e-12
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 143 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 310
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 311 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 490
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 491 TDYLMKI 511
T +L +
Sbjct: 232 TQHLQNL 238
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.4 bits (100), Expect = 1e-05
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 18/158 (11%)
Frame = +2
Query: 92 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 259
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 260 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 397
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 398 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 511
SG +H +P+ + A+ R+D+ G+ LT+YL ++
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEV 200
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.5 bits (78), Expect = 0.005
Identities = 27/138 (19%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Frame = +2
Query: 134 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 277
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 278 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 457
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 458 ILRLDLAGRDLTDYLMKI 511
++++ G D+T MK+
Sbjct: 318 RIKINYGGDDITLLFMKL 335
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.058
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 203 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 346
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.23
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +3
Query: 312 PSTHPPCT*LSRPCSHC-TRPV--VPPVSCWIPAMVYPTQYPSTRVTPYRTPSCVWT*PV 482
P HPP LS+P S P+ VPPV + + P PS P PS P+
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVPPVP-KLSSKAPPVPLPSADAPPIPVPSTAPPVPI 1045
Query: 483 ATS 491
TS
Sbjct: 1046 PTS 1048
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 14 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 145
PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.0 bits (52), Expect(2) = 0.82
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 418 HSTHLRGLRPTARHPAFGLSR 480
H+ H+R P P+FGL R
Sbjct: 486 HTEHIRTYTPNVIEPSFGLGR 506
Score = 21.4 bits (43), Expect(2) = 0.82
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 286 EDDTDYVRDLQHTRHVRSY 342
E D + +HT H+R+Y
Sbjct: 475 ESDLVTIEKRKHTEHIRTY 493
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.6
Identities = 26/92 (28%), Positives = 38/92 (41%)
Frame = +3
Query: 225 LPRSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPPVSCWIPA 404
+P + S +P P+ P PT S ST PP S + + + SC
Sbjct: 345 IPPTGNSTTPVTPTVP-PTST------SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTST 397
Query: 405 MVYPTQYPSTRVTPYRTPSCVWT*PVATSQTT 500
+ PT +T VTP P+ T P+ T+ T
Sbjct: 398 SIPPTGNSTTPVTPTVPPTSSST-PLTTTNCT 428
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 245 LLTEAPLNPKANREKMTQIMFETFN 319
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 405 SPESST-IPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFS 283
+P+S+ + +V D S+S Y+A +K +N+IC+++S
Sbjct: 44 NPDSNDDVSLVLVDTQSDSNE--REYLAAEIKKANVICLVYS 83
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 198 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 284
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 369 PVVPPVSCWIPAMVYPTQYPSTRVTPY 449
P+ WIP MVYP + T+ TP+
Sbjct: 513 PIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 5.0
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -2
Query: 298 LCHLLSVGFGVEGSFGEQDWVLLGSYTQLIVEGVMP-DLLHIVPVGDDAVFDGVFECEDT 122
L ++ VG +G+F W +LGS M D +VPV D + F + E
Sbjct: 96 LVEVVDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPV-DKSAFPSIAEAATL 154
Query: 121 SL----ALCLITYV 92
S+ A CL+ +V
Sbjct: 155 SVNPCTAYCLLQHV 168
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 124 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 234
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 239 GAPRELHAAHCRRCDARSSP 180
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 426 GTVWDTPSPESSTIPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFSLLAL 271
G+ PS IP++ P+ S + I ++ L VS I FS+L +
Sbjct: 493 GSTKTLPSIGKKPIPLLDPNPISSTPISITFWVIMFLSVSFTIVTFFSILRI 544
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 62 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 148
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 8.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 115 QERYPHTQIPHRTRHRH 165
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 189 SGITPSTMSCV*LPRSTQSCSPKLPSTPKPT 281
S T S +S + R ++S LPSTP PT
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPFPT 429
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 398 SGDGVSHTVPIYEGYALP 451
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 250 HRXXXXXXXXXREDDTDYVRDLQHTRHVRSYPGRALTV 363
H +ED+T D+ R++R +PG TV
Sbjct: 78 HHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTV 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,656
Number of Sequences: 5004
Number of extensions: 52562
Number of successful extensions: 152
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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