Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N09
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92817-4|CAB07297.3| 633|Caenorhabditis elegans Hypothetical pr... 295 1e-80
Z74027-4|CAA98423.1| 561|Caenorhabditis elegans Hypothetical pr... 266 7e-72
Z74027-3|CAA98422.1| 557|Caenorhabditis elegans Hypothetical pr... 266 7e-72
U10414-12|AAA19079.3| 497|Caenorhabditis elegans Nematode astac... 35 0.034
AC006722-1|AAK68420.1| 401|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006618-1|AAK68250.1| 762|Caenorhabditis elegans Hypothetical ... 29 2.9
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 5.1
U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z81540-11|CAB04397.2| 191|Caenorhabditis elegans Hypothetical p... 27 9.0
AC006833-7|AAF60945.1| 289|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z92817-4|CAB07297.3| 633|Caenorhabditis elegans Hypothetical
protein W08G11.4 protein.
Length = 633
Score = 295 bits (725), Expect = 1e-80
Identities = 138/182 (75%), Positives = 152/182 (83%)
Frame = +1
Query: 7 GELLEILGSIINGFALPLKSEHKQFXXXXXXXXXXXXXXSLYHAQLAYCVVQFLEKDATL 186
GELLEILGSIINGFALPLK EHK F SLYHAQLAYCVVQF+EKD++L
Sbjct: 264 GELLEILGSIINGFALPLKQEHKVFLVKVLLPLHKPKCLSLYHAQLAYCVVQFIEKDSSL 323
Query: 187 TEPVVRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPAQFAKIQEPLFRQIAKCVSSPHFQ 366
T V LLKFWP+TCS KEVMFLGE+EEILD+IEP QF KI +PLFRQ+AKCVSSPHFQ
Sbjct: 324 TPQVFEALLKFWPRTCSSKEVMFLGEVEEILDIIEPEQFKKIIDPLFRQLAKCVSSPHFQ 383
Query: 367 VAERALYFWNNEYIMSLMEENNQVIMPIMFPALYRISKEHWNQTIVALRYNVLKDFMEMN 546
VAERALYFWNNEYI+SL+E+ + ++MPIMFPALYRISKEHWNQTIVAL YNVLK FMEMN
Sbjct: 384 VAERALYFWNNEYILSLIEDTSSLVMPIMFPALYRISKEHWNQTIVALVYNVLKTFMEMN 443
Query: 547 SK 552
K
Sbjct: 444 GK 445
>Z74027-4|CAA98423.1| 561|Caenorhabditis elegans Hypothetical
protein C13G3.3b protein.
Length = 561
Score = 266 bits (652), Expect = 7e-72
Identities = 123/181 (67%), Positives = 143/181 (79%)
Frame = +1
Query: 10 ELLEILGSIINGFALPLKSEHKQFXXXXXXXXXXXXXXSLYHAQLAYCVVQFLEKDATLT 189
ELLEILGSIINGFALPLK EHK F S+YH QLAYCVVQF+EKD++LT
Sbjct: 248 ELLEILGSIINGFALPLKEEHKTFLLRVLLPLHKVKSLSVYHPQLAYCVVQFIEKDSSLT 307
Query: 190 EPVVRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPAQFAKIQEPLFRQIAKCVSSPHFQV 369
EPV+ G+L+FWPK S KEVMFL E+EE+LDVIEP +F KI PLF QIA+CVSSPHFQV
Sbjct: 308 EPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQV 367
Query: 370 AERALYFWNNEYIMSLMEENNQVIMPIMFPALYRISKEHWNQTIVALRYNVLKDFMEMNS 549
AERALY+WNNEY+MSL+ +N +VI+PIMFP L++ SK HWN+TI L YN LK FMEMN
Sbjct: 368 AERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQ 427
Query: 550 K 552
K
Sbjct: 428 K 428
>Z74027-3|CAA98422.1| 557|Caenorhabditis elegans Hypothetical
protein C13G3.3a protein.
Length = 557
Score = 266 bits (652), Expect = 7e-72
Identities = 123/181 (67%), Positives = 143/181 (79%)
Frame = +1
Query: 10 ELLEILGSIINGFALPLKSEHKQFXXXXXXXXXXXXXXSLYHAQLAYCVVQFLEKDATLT 189
ELLEILGSIINGFALPLK EHK F S+YH QLAYCVVQF+EKD++LT
Sbjct: 244 ELLEILGSIINGFALPLKEEHKTFLLRVLLPLHKVKSLSVYHPQLAYCVVQFIEKDSSLT 303
Query: 190 EPVVRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPAQFAKIQEPLFRQIAKCVSSPHFQV 369
EPV+ G+L+FWPK S KEVMFL E+EE+LDVIEP +F KI PLF QIA+CVSSPHFQV
Sbjct: 304 EPVISGMLRFWPKQHSPKEVMFLNELEEVLDVIEPNEFQKIMTPLFSQIARCVSSPHFQV 363
Query: 370 AERALYFWNNEYIMSLMEENNQVIMPIMFPALYRISKEHWNQTIVALRYNVLKDFMEMNS 549
AERALY+WNNEY+MSL+ +N +VI+PIMFP L++ SK HWN+TI L YN LK FMEMN
Sbjct: 364 AERALYYWNNEYVMSLVADNARVIIPIMFPVLFKNSKSHWNKTIHGLIYNALKMFMEMNQ 423
Query: 550 K 552
K
Sbjct: 424 K 424
>U10414-12|AAA19079.3| 497|Caenorhabditis elegans Nematode astacin
protease protein28 protein.
Length = 497
Score = 35.1 bits (77), Expect = 0.034
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 283 VIEPAQFAKIQEPLFRQIAKCVSSPHFQVAERALYFWNNEYIMSLMEENN 432
+++ F + P+F Q +S+ + +A+ FWN+ +S E+NN
Sbjct: 123 IVDTTNFWSVSVPIFYQFDTKLSATNIANVRKAIQFWNDNSCLSFKEDNN 172
>AC006722-1|AAK68420.1| 401|Caenorhabditis elegans Hypothetical
protein Y19D10A.7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 307 KIQEPLFRQ-IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNQVIMPIMFPALYRISKE 483
KI E ++ I + + H E + Y +S++ ENN + FP L RI
Sbjct: 262 KIVETIYGSLIIRSTNLTHIAFLENLKHILTFNYSVSIIIENNPQFSNLTFPNLKRI--- 318
Query: 484 HWNQTIVALRYNVLKDFMEMNSK 552
+ N + A+ N D + N K
Sbjct: 319 YTNSLLTAIMLNNNSDILSPNFK 341
>AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical
protein F56A4.9 protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 307 KIQEPLFRQ-IAKCVSSPHFQVAERALYFWNNEYIMSLMEENNQVIMPIMFPALYRISKE 483
KI E ++ I + + H E + Y +S++ ENN + FP L RI
Sbjct: 307 KIVETIYGSLIIRSTNLTHIAFLENLKHILTFNYSVSIIIENNPQFSNLTFPNLKRI--- 363
Query: 484 HWNQTIVALRYNVLKDFMEMNSK 552
+ N + A+ N D + N K
Sbjct: 364 YTNSLLTAIMLNNNSDILSPNFK 386
>AC006618-1|AAK68250.1| 762|Caenorhabditis elegans Hypothetical
protein C45B2.6 protein.
Length = 762
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 351 GYALSYLPEQWLLYFSK-LCWLNHVQYLF 268
GYAL Y P +++YF+K +++ ++YL+
Sbjct: 68 GYALVYTPNNYVVYFNKNASYIDDLEYLW 96
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 316 EPLFRQIAKCVSSPHFQVAERAL--YFWNNEYIMSLME 423
+PL I K VS FQ AER L + EY+ LM+
Sbjct: 90 QPLTEPIVKPVSKKKFQAAERFLPETVYKKEYLADLMD 127
>U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical
protein R03H4.6 protein.
Length = 646
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 346 VSSPHFQVAERALYFWNNEYIMSLME--ENNQVIM 444
+S+ + Q + R FWNN Y + L E +NN++++
Sbjct: 354 LSNAYLQNSIRVHSFWNNTYSLELQEVIQNNKMLL 388
>Z81540-11|CAB04397.2| 191|Caenorhabditis elegans Hypothetical
protein F46B3.14 protein.
Length = 191
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 371 ATWKCGLDTHLAICRNNGSCILAN--CAGSITSNISSI-SPKNITSFCEHVLG 222
A+ KCG H A+ G C+ +N C+ +I +S + S ++ S + LG
Sbjct: 71 ASIKCGRGYHCAVENGQGGCVPSNIPCSPAIKMFVSDVPSEVDLCSLVKCALG 123
>AC006833-7|AAF60945.1| 289|Caenorhabditis elegans Hypothetical
protein ZK616.7 protein.
Length = 289
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 429 VFLHQ*HNVFIVPEIKRPLSHLEVWTGYALSYLP-EQWLLYFSKL 298
+ L H+ F +P+IK+ +SHL V TG A S +Q++L + L
Sbjct: 214 IALQSIHSHFTLPDIKQIVSHLRV-TGRAASVQTLQQYMLIWKVL 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,612,898
Number of Sequences: 27780
Number of extensions: 267640
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -