Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N08
(458 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subuni... 60 3e-09
BC004424-1|AAH04424.1| 411|Homo sapiens POLR3C protein protein. 60 4e-09
BC002586-1|AAH02586.1| 534|Homo sapiens polymerase (RNA) III (D... 60 4e-09
AY091463-1|AAM12033.1| 534|Homo sapiens RNA polymerase III subu... 60 4e-09
AJ238221-1|CAB41919.1| 534|Homo sapiens RNA polymerase III subu... 60 4e-09
AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (D... 59 8e-09
Y00816-1|CAA68755.1| 2039|Homo sapiens protein ( Human mRNA for ... 33 0.62
X05309-1|CAA28933.1| 1537|Homo sapiens protein ( Human mRNA for ... 33 0.62
L17418-2|AAB60694.1| 2039|Homo sapiens complement receptor 1 pro... 33 0.62
L17418-1|AAB60695.1| 2489|Homo sapiens complement receptor 1 pro... 33 0.62
AL691452-3|CAI16725.1| 2039|Homo sapiens complement component (3... 33 0.62
AL691452-2|CAI16723.1| 2039|Homo sapiens complement component (3... 33 0.62
AL691452-1|CAI16724.1| 2039|Homo sapiens complement component (3... 33 0.62
AL137789-3|CAI16043.1| 2039|Homo sapiens complement component (3... 33 0.62
AL137789-2|CAI16042.1| 2039|Homo sapiens complement component (3... 33 0.62
AL137789-1|CAI16044.1| 2039|Homo sapiens complement component (3... 33 0.62
>U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subunit
protein.
Length = 533
Score = 60.5 bits (140), Expect = 3e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Frame = +2
Query: 188 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 367
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
Query: 368 PSVNELVADYKLVSENVLLLIRYPRYL 448
+V +Y+ VL ++RYPRY+
Sbjct: 67 VHKRGVV-EYEAQCSRVLRIVRYPRYI 92
>BC004424-1|AAH04424.1| 411|Homo sapiens POLR3C protein protein.
Length = 411
Score = 60.1 bits (139), Expect = 4e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Frame = +2
Query: 188 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 367
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
Query: 368 PSVNELVADYKLVSENVLLLIRYPRYL 448
+V +Y+ VL ++RYPRY+
Sbjct: 67 VHKRGVV-EYEAQCSRVLRMLRYPRYI 92
>BC002586-1|AAH02586.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) protein.
Length = 534
Score = 60.1 bits (139), Expect = 4e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Frame = +2
Query: 188 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 367
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
Query: 368 PSVNELVADYKLVSENVLLLIRYPRYL 448
+V +Y+ VL ++RYPRY+
Sbjct: 67 VHKRGVV-EYEAQCSRVLRMLRYPRYI 92
>AY091463-1|AAM12033.1| 534|Homo sapiens RNA polymerase III subunit
RPC62 protein.
Length = 534
Score = 60.1 bits (139), Expect = 4e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Frame = +2
Query: 188 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 367
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
Query: 368 PSVNELVADYKLVSENVLLLIRYPRYL 448
+V +Y+ VL ++RYPRY+
Sbjct: 67 VHKRGVV-EYEAQCSRVLRMLRYPRYI 92
>AJ238221-1|CAB41919.1| 534|Homo sapiens RNA polymerase III subunit
protein.
Length = 534
Score = 60.1 bits (139), Expect = 4e-09
Identities = 30/87 (34%), Positives = 53/87 (60%)
Frame = +2
Query: 188 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 367
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
Query: 368 PSVNELVADYKLVSENVLLLIRYPRYL 448
+V +Y+ VL ++RYPRY+
Sbjct: 67 VHKRGVV-EYEAQCSRVLRMLRYPRYI 92
>AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) variant protein.
Length = 534
Score = 58.8 bits (136), Expect = 8e-09
Identities = 30/87 (34%), Positives = 52/87 (59%)
Frame = +2
Query: 188 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 367
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L + +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVRLIRTGSQPLRVIAHDTGTSLDQVKKALCVLAQHNLVSYQ 66
Query: 368 PSVNELVADYKLVSENVLLLIRYPRYL 448
+V +Y+ VL ++RYPRY+
Sbjct: 67 VHKRGVV-EYEAQCSRVLRMLRYPRYI 92
>Y00816-1|CAA68755.1| 2039|Homo sapiens protein ( Human mRNA for
complement receptor type 1 (CR1, C3b/C4b receptor,
CD35). ).
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>X05309-1|CAA28933.1| 1537|Homo sapiens protein ( Human mRNA for
C3b/C4b receptor (CR1) F allotype. ).
Length = 1537
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 970 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1016
>L17418-2|AAB60694.1| 2039|Homo sapiens complement receptor 1 protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>L17418-1|AAB60695.1| 2489|Homo sapiens complement receptor 1 protein.
Length = 2489
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1922 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1968
>AL691452-3|CAI16725.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL691452-2|CAI16723.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL691452-1|CAI16724.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL137789-3|CAI16043.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL137789-2|CAI16042.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL137789-1|CAI16044.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 73 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 213
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,654,608
Number of Sequences: 237096
Number of extensions: 1199689
Number of successful extensions: 1558
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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