Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N08
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical
           protein Y57G11B.2 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 271 TYCFDTEDNRLTEITGCGQSTDT 339
           TYCF++ ++ LTE+T   QS  T
Sbjct: 47  TYCFESYNSNLTEVTASCQSMGT 69


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 266 CRKHINHHQLFAQFRRNNDI 207
           C KH++  QL++ FR+N D+
Sbjct: 214 CLKHVSCSQLWSMFRKNCDV 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,738
Number of Sequences: 27780
Number of extensions: 208752
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)