Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N07
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.4  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   6.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    24   8.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    24   8.5  

>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 190 GVAAAPRHPYLY 225
           G+A +PRHPYL+
Sbjct: 210 GLAVSPRHPYLF 221


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 103  AATRRRVSISSPNPPGSLSFPLHDSPLPTGVAAAPRHP 216
            AA  +  + + P PP S+  P    P+P G  +AP  P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 109 TRRRVSISSPNPPGSLSFP--LHDSPLPTGVAAAPRH 213
           +R R    S N   +LS P   H SP P+ V A+ RH
Sbjct: 121 SRGRHMAFSKNDGTNLSLPPSRHQSPPPSSVLASQRH 157


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 124 SISSPNPPGSLSFPLHDSPLPTGVAAAP 207
           +IS PNP  S   P H S +P+ ++  P
Sbjct: 302 TISVPNPNLSQMGPSHSSSVPSNLSPNP 329


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 VSISSPNPPGSLSFPLHDSPLPTGVAAAPRHPY 219
           ++ S+P+P GS     +DS L   V      PY
Sbjct: 866 IASSNPSPAGSEGIFYYDSTLKRVVTCCDERPY 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,696
Number of Sequences: 5004
Number of extensions: 16933
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)