Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N07
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1007 + 13160772-13161311                                         32   0.17 
09_04_0306 + 16555664-16556623                                         29   1.2  
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614     28   2.7  
03_05_0057 + 20350971-20351405                                         28   3.6  
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551...    28   3.6  
06_03_1447 + 30233090-30233776                                         27   4.7  
06_03_1436 + 30148325-30149011                                         27   4.7  
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012...    27   6.2  
02_05_0363 - 28297295-28298167                                         27   6.2  
05_07_0121 + 27831499-27832317                                         27   8.2  

>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 136 PNPPGSLSFPLHDSPLPTGVAAAPRHPYLYVNNHYK 243
           P PP  +  P   +P P  VAA P+ PY Y  + +K
Sbjct: 9   PAPPSPVQAPAPAAPPPVSVAARPQAPYYYYCHGWK 44


>09_04_0306 + 16555664-16556623
          Length = 319

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 136 PNPPGSLSFPLHDSPLPTGVAAAPRHP 216
           P PPGS+S P++ SP+    AA  R P
Sbjct: 194 PAPPGSVSHPINGSPVVPAAAALWRVP 220


>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
          Length = 248

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 122 TRRRVAARAS-SPLHNTVPRRITPHRALTNRPQ 27
           +R R  ARAS SP   T  RR  P R L  RPQ
Sbjct: 138 SRLRAPARASPSPDAQTPGRRSRPRRCLAGRPQ 170


>03_05_0057 + 20350971-20351405
          Length = 144

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 90 SAAQYSAAPHHTAPRPNKPTA 28
          +AA+   APHH  P P++P+A
Sbjct: 33 AAARPDEAPHHRQPAPDRPSA 53


>02_01_0740 -
           5511434-5511547,5511952-5512023,5512106-5512300,
           5512408-5512611,5512690-5512848,5513144-5513249,
           5513387-5513554,5513644-5513834,5514410-5514634,
           5514818-5514935,5515023-5515195,5515280-5515327,
           5515484-5515589,5515697-5515802,5516211-5516332,
           5516661-5516741,5516844-5516934,5517036-5517132,
           5517287-5517919
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +1

Query: 133 SPNPPGSLSFPLHDSPLPTGVAAAPRHPYLY 225
           SP PP   S PL +  LP G  AAPR P LY
Sbjct: 21  SPAPPPPRS-PLAER-LPAGQIAAPRSPALY 49


>06_03_1447 + 30233090-30233776
          Length = 228

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +1

Query: 91  DEARAATRRRVSISSPNPPGSLSFPLHD-----SPLPTGVAAA 204
           D+A+ A  R V + +P  PGSLS   HD     SPL +  AAA
Sbjct: 171 DDAKDALARHVRLDNPLSPGSLS-EFHDVHARCSPLASPDAAA 212


>06_03_1436 + 30148325-30149011
          Length = 228

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +1

Query: 91  DEARAATRRRVSISSPNPPGSLSFPLHD-----SPLPTGVAAA 204
           D+A+ A  R V + +P  PGSLS   HD     SPL +  AAA
Sbjct: 171 DDAKDALARHVRLDNPLSPGSLS-EFHDVHARCSPLASPDAAA 212


>09_04_0081 -
           14400293-14400397,14400953-14401036,14401144-14401214,
           14401293-14401380,14401487-14401678,14401772-14402704
          Length = 490

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 87  AAQYSAAPHHTAPRPNKPTAKRISTPRA 4
           AA     PHH APRP  P A     P A
Sbjct: 235 AAHPPPPPHHPAPRPPPPMAAAPRQPAA 262


>02_05_0363 - 28297295-28298167
          Length = 290

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 43  RARCGVMRRGTVLCSGDEARAATRRRVSISSPNPPGSLSFPLHDSPLPTGVAAA 204
           R +   M  G  +C     R +  RR   + P  PG+ S  L  SPL    +AA
Sbjct: 220 RRQTSTMPSGFAVCLSPLVRPSPGRRHRHAHPPDPGTFSCELRPSPLHNLSSAA 273


>05_07_0121 + 27831499-27832317
          Length = 272

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 58  VMRRGTVLCSGDEARAATRRRVSISSPNPPGSLSFPLHDSPLPTGVAA 201
           ++    VL +  + +AAT  + + +SP P  + +    D P PT V A
Sbjct: 12  LLATAAVLAASQKPKAATPTKATPASPGPAAAAA----DGPAPTNVTA 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,159
Number of Sequences: 37544
Number of extensions: 159053
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)