Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N07
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.26 
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    31   0.26 
AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical...    30   0.59 
AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical...    29   1.8  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    27   4.2  
U70853-2|AAM97995.1|  228|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    27   7.3  
AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical...    27   7.3  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 81  QYSAAPHHTAPRPNKPTAKRISTP 10
           QY+ AP H +P+P +PT  +  TP
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQTP 531


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 81  QYSAAPHHTAPRPNKPTAKRISTP 10
           QY+ AP H +P+P +PT  +  TP
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQTP 531


>AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical
           protein C34B2.9 protein.
          Length = 213

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 22  SFCGRFVRARCGVMRRGTVLCSGDEARAATRRRVSISSPNPPGSLSFPLHDS 177
           SF  +  R   G  +R     +   + +A+ RR  ISS NPP S   PLH S
Sbjct: 76  SFDEKSERYGAGFGKRVVESSTSTASSSASSRRPIISSNNPPSSSPVPLHVS 127


>AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical
           protein Y39B6A.16 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
 Frame = +1

Query: 34  RFVRARCGVMRRGTVLCSGDEARAATRRRVSISSPNPPGSLSFPLHDSP---LPTGVAAA 204
           RF +A+               ++A T +  S    +PP S   P+H  P   +     A 
Sbjct: 199 RFTKAQAKAEAEAEAPAKSPGSKAQTTKCTSNYQSHPPASFETPIHHPPKTSMGFTTPAN 258

Query: 205 PRHPYLYVNNH 237
           P H + Y+  H
Sbjct: 259 PPHMFPYLKKH 269


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 97  ARAATRRRVSISSPNPPGSLSFPL-HDSPLPTGVAAAPR 210
           +R++   R+S   P  PGS  +PL  D+P   G + +PR
Sbjct: 23  SRSSVAPRLSSDRPQYPGSSQYPLGSDAPQYRGSSQSPR 61


>U70853-2|AAM97995.1|  228|Caenorhabditis elegans Hypothetical
           protein M01H9.5 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 70  GTVLCSGDEARAATRRRVSISSPNPPGSLSFPLH 171
           GT+L  G      T R +  +S +PP SL  PLH
Sbjct: 96  GTMLVQGRADTIRTLRDIVRNSAHPPTSLHRPLH 129


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 69  APHHTAPRPNKPTAKRISTPR 7
           AP  T   P+KPTA++  TPR
Sbjct: 226 APSSTPAGPSKPTARKPPTPR 246


>AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical
           protein C09G12.9 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +1

Query: 49  RCGVMRRGTVLCSGDEARAATRRRVSISSPNPPGSLSFPLHDSPLPTGVAAAPRHP 216
           +C V  R     + + +        S SS   P   S P   +P PTG  AAP  P
Sbjct: 138 KCPVFARSAANSATNASATNPSAGSSASSTPTPYPSSQPTMPTPYPTGSGAAPYPP 193


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical protein
            T21C9.6 protein.
          Length = 1215

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46   ARCGVMRRGTVLCSGD-EARAATRRRVSISSPNPPGSL 156
            A  G++ RGT +C G   ARA   + +  +    PG +
Sbjct: 1102 ANIGIILRGTTVCEGKVRARARVAKTLEEAKETKPGEI 1139


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 124 SISSPNPPGSLSFPLHDSPLPTGVAAAPRHP 216
           ++S+ +PP +++ P   +P+PT     P +P
Sbjct: 474 TVSTMSPPTTVTVPTTPTPVPTTTNTPPANP 504


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 124 SISSPNPPGSLSFPLHDSPLPTGVAAAPRHP 216
           ++S+ +PP +++ P   +P+PT     P +P
Sbjct: 474 TVSTMSPPTTVTVPTTPTPVPTTTNTPPANP 504


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 124 SISSPNPPGSLSFPLHDSPLPTGVAAAPRHP 216
           ++S+ +PP +++ P   +P+PT     P +P
Sbjct: 474 TVSTMSPPTTVTVPTTPTPVPTTTNTPPANP 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,867,032
Number of Sequences: 27780
Number of extensions: 105257
Number of successful extensions: 360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)