Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N06
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 241 4e-65
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 35 0.006
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 33 0.019
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 33 0.033
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 33 0.033
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 31 0.076
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 31 0.13
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.13
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 30 0.23
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 30 0.23
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.71
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 0.71
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 28 0.93
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 0.93
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 28 0.93
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 27 1.2
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 1.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 1.6
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 2.9
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 2.9
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 2.9
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 2.9
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 26 3.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 3.8
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 26 3.8
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 5.0
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 5.0
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 25 8.7
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 241 bits (590), Expect = 4e-65
Identities = 106/138 (76%), Positives = 121/138 (87%)
Frame = +2
Query: 98 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGIC 277
++ LTRIAIV+ D+C+PK+CRQEC++SCPVVR GKLCIEV P D+IA ISE LCIGCGIC
Sbjct: 2 SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGIC 61
Query: 278 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALK 457
VKKCPF AI IIN+P+NLE THRYS NSFKLHRLP PRPG+VLGLVG NGIGKSTALK
Sbjct: 62 VKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALK 121
Query: 458 ILAGKPKPNLGRFADPPD 511
IL+GK KPNLGR+ +PPD
Sbjct: 122 ILSGKMKPNLGRYDNPPD 139
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 404 EVLGLVGQNGIGKSTALKILA 466
E++ L+G+NG GK+T K +A
Sbjct: 376 EIIVLLGENGTGKTTFCKWMA 396
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 383 LPIPRPGEVLGLVGQNGIGKSTALKILAGKPKPNLGRFA 499
L +P+ L LVG NG GKST LK+L+GK G +
Sbjct: 25 LDLPKGSRTL-LVGANGAGKSTLLKLLSGKSLAKAGHIS 62
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 33.5 bits (73), Expect = 0.019
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 389 IPRPGEVLGLVGQNGIGKSTALKIL 463
+ +PG+V+ LVG++G GKST ++IL
Sbjct: 606 VAQPGKVIALVGESGGGKSTIMRIL 630
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 32.7 bits (71), Expect = 0.033
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 410 LGLVGQNGIGKSTALKILAGKPKPNLG 490
+ ++G NG GKST +K+L G+ P +G
Sbjct: 703 IAVIGPNGAGKSTLIKVLTGELLPTVG 729
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 32.7 bits (71), Expect = 0.033
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 341 TTHRYSKNS-FKLHRLPIPRPGEVL--GLVGQNGIGKSTALKILAGKPKPNLGRFADPP 508
T YSK + R + RPG L G+VG IGKST +IL K NLG A+ P
Sbjct: 22 TRRYYSKQKDISIVRQRLGRPGNHLKIGIVGMPNIGKSTLFQILT---KTNLGNPANYP 77
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 31.5 bits (68), Expect = 0.076
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 410 LGLVGQNGIGKSTALKILAGKPKPNLGRFADPPD 511
+ ++G NG GKST +K+L G+ P G+ P+
Sbjct: 722 VAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPN 755
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 401 GEVLGLVGQNGIGKSTALKIL 463
G G+VG NG GKST L+ +
Sbjct: 470 GHRYGVVGHNGCGKSTLLRAI 490
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 30.7 bits (66), Expect = 0.13
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 338 HTTHRYSKN-SFKLHRLPIP-RPGEVLGLVGQNGIGKSTALKILAGKPKPNLGR 493
H + +Y ++ SF L+ + I P E +G+VG+ G GKST L +P G+
Sbjct: 1230 HYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGK 1283
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.13
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 410 LGLVGQNGIGKSTALKILAGKPKPNLG 490
+ LVG NG GK+T +K++ K +P+ G
Sbjct: 623 VALVGPNGAGKTTLIKLILEKVQPSTG 649
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 401 GEVLGLVGQNGIGKSTALKILA 466
G GL+ NG GKST L +A
Sbjct: 301 GRRYGLIAPNGSGKSTLLHAIA 322
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 29.9 bits (64), Expect = 0.23
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 398 PGEVLGLVGQNGIGKSTALKILA 466
PG++ L+G++G GK+T L +LA
Sbjct: 910 PGKLTALMGESGAGKTTLLNVLA 932
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.9 bits (64), Expect = 0.23
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 401 GEVLGLVGQNGIGKSTALKILA 466
G GL G+NGIGKST L+ L+
Sbjct: 208 GRRYGLTGRNGIGKSTLLRALS 229
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.71
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 404 EVLGLVGQNGIGKSTALKILAG 469
E L LVG+ G GK+T +++LAG
Sbjct: 468 EPLLLVGETGTGKTTTIQLLAG 489
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 0.71
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 338 HTTHRYSKN-SFKLHRLPIP-RPGEVLGLVGQNGIGKSTALKILAGKPKPNLG 490
H + RY +N L+ + + +P E +G+VG+ G GKST L +P G
Sbjct: 1228 HYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSG 1280
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 389 IPRPGEVLGLVGQNGIGKSTALKILAGKPKPNLG 490
+ R GE+ +VG+ G+GKS+ L+ G + + G
Sbjct: 605 VARRGELCCIVGKVGMGKSSLLEACLGNMQKHSG 638
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 27.9 bits (59), Expect = 0.93
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 401 GEVLGLVGQNGIGKSTALKILAGK 472
G+ GL+G NG GKST L+ +A +
Sbjct: 101 GQRYGLLGDNGSGKSTFLESVAAR 124
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 410 LGLVGQNGIGKSTALKILAG 469
+ +VG+NG GKST L ++ G
Sbjct: 419 VAIVGKNGTGKSTLLNLITG 438
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.9 bits (59), Expect = 0.93
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 359 KNSFKLHRLPIPRP-GEVLGLVGQNGIGKSTALKILAGKPKPNLG 490
+N F L + + P GE++ ++G +G GKST + +L P G
Sbjct: 447 ENLFSLINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYG 491
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 0.93
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 245 SEELCIGCGICVKKCPFDAITI 310
+EEL +G G C+ PFD +T+
Sbjct: 239 NEELLMGYGFCLPDNPFDTVTL 260
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 208 AQFAHTHNWATLLAFLSTSFWF 143
A+ +HT+NWA L++ ++ FWF
Sbjct: 19 AESSHTNNWAVLIS--TSRFWF 38
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -1
Query: 139 TIRIYYS-DTGKFICFLIISFSGHHC 65
T+++YY+ D+G ++C ++ F+G C
Sbjct: 589 TVKLYYAFDSGDYLCLVMDYFNGGDC 614
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 395 RPGEVLGLVGQNGIGKSTALKIL 463
+PG+ + VG +G GKST + ++
Sbjct: 1145 KPGQFVAFVGSSGCGKSTTIGLI 1167
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 395 RPGEVLGLVGQNGIGKSTALKILAG 469
R GE L G NG GK+T L + G
Sbjct: 288 REGERWALTGSNGSGKTTLLAYVVG 312
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 359 KNSFKLHRLPIPRP-GEVLGLVGQNGIGKSTALKILA 466
KN++ + P P G+ LG++G GIGK+ A + A
Sbjct: 141 KNNWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARA 177
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 23 ANVGKVSPTFALLSAVMSRKRDNEETDKLTRIAI 124
AN K+ + L A+ S + D+E DKL +++I
Sbjct: 105 ANSSKIYESMIALKALNSSQNDSEVKDKLEKLSI 138
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 278 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTAL 454
+ K D TI IP+N H H++ +S ++ ++ + R V G +G S A+
Sbjct: 269 IAKAKIDT-TIAVIPANAFHHLVHKFPNSSAQIVQVILTRFQRVTFSTGYEYLGLSDAI 326
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 401 GEVLGLVGQNGIGKSTALKIL 463
G+ +G++G IGKS A KIL
Sbjct: 159 GKRVGIIGMGAIGKSFAQKIL 179
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 410 LGLVGQNGIGKSTALKILA 466
+ L+G NG+GKST L +A
Sbjct: 345 ISLIGVNGVGKSTTLAKIA 363
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 383 LPIPRPGEVLGLVGQNGIGKSTALKILAGKPK 478
LP + GLVG +GKS+ + L G K
Sbjct: 295 LPDGKTKMTFGLVGYPNVGKSSTINALVGSKK 326
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 309 SSIFHQIWRNTPLIVIPRIL--SNFTGYQFHVLE-KCLG*LVKTVLASP 446
SSIF +W ++ L ++P+ L + F ++ C+G V+T +P
Sbjct: 323 SSIFFWVWCHSLLYIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQNP 371
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 263 QYTVLQRWSLFYHWVLLRCTVCPYAQLGNSSCIPVDI 153
+Y +L++ S+ Y + + T G SSCIPV+I
Sbjct: 49 RYELLRKSSIRYTILQIGITFIYLQNNGKSSCIPVNI 85
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 242 WSLFYHWVL-LRCTVCPYAQLGNSSCIPVDIFL 147
W F W+ + CT+ Y + +S+ I V IFL
Sbjct: 402 WRPFSFWLFSIFCTIAAYYLVSSSTKITVFIFL 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,987
Number of Sequences: 5004
Number of extensions: 52496
Number of successful extensions: 207
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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