Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N05
         (223 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1538 - 27565434-27565445,27565947-27566016,27566181-275665...    27   2.7  
06_03_0219 - 18227559-18227858,18227864-18228340                       26   4.7  
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119...    26   4.7  
01_07_0110 - 41134504-41135763                                         26   4.7  
04_03_0070 + 10677677-10679989                                         25   6.2  
06_03_1139 + 27925970-27925985,27926427-27927079                       25   8.3  

>07_03_1538 -
           27565434-27565445,27565947-27566016,27566181-27566518,
           27566597-27566747,27566845-27566990
          Length = 238

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 166 ATSLLLVAGSPPLCSPTPP 222
           A +LL++A SPP  SP PP
Sbjct: 26  AVALLVLADSPPAPSPPPP 44


>06_03_0219 - 18227559-18227858,18227864-18228340
          Length = 258

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 ACRAATSLLLVAGSPPLCSPTPP 222
           AC A+T     A SPP  SP PP
Sbjct: 80  ACAASTVRRPAAPSPPPASPPPP 102


>02_01_0174 -
           1193696-1193726,1193822-1194175,1194307-1194542,
           1194629-1194741,1195963-1196161,1196427-1196513
          Length = 339

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 196 GNRQRGGARSPRDTRPTITVCYIYYN 119
           G R+    RSP +TRPT T+  I ++
Sbjct: 138 GGRRGNSKRSPNNTRPTKTLFVINFD 163


>01_07_0110 - 41134504-41135763
          Length = 419

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 151 VACRAATSLLLVAGSPPLCSPTPP 222
           V   AA +LL++  SPP CS   P
Sbjct: 9   VLAAAAAALLVLLASPPSCSAAAP 32


>04_03_0070 + 10677677-10679989
          Length = 770

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 ACRAATSLLLVAGSPPLCSPTPP 222
           A  AA S  +V G P   SPTPP
Sbjct: 163 AVEAAASQHVVVGDPSSYSPTPP 185


>06_03_1139 + 27925970-27925985,27926427-27927079
          Length = 222

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
 Frame = +3

Query: 135 QTVIVGRVSR------GDLAPPRCRF 194
           Q++ VGRV        G LAPPRCR+
Sbjct: 79  QSMFVGRVQFQDKPIWGSLAPPRCRY 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,013,200
Number of Sequences: 37544
Number of extensions: 75200
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)