Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N05
         (223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   0.44 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.44 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   1.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   1.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   7.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   9.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   9.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 0.44
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 157 TRPTITVCYIYYNVMYH*ILLYV 89
           +R    VC++ +N+MY  I L++
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 0.44
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 157 TRPTITVCYIYYNVMYH*ILLYV 89
           +R    VC++ +N+MY  I L++
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHI 430


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 106 NGTLHYNKYNKQ 141
           N T+H N YNK+
Sbjct: 320 NNTIHNNNYNKK 331


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 160 DTRPTITVCYIYYNVM 113
           DT P + + YIY+  M
Sbjct: 116 DTEPILLIAYIYHLYM 131


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 157 TRPTITVCYIYYNVMY 110
           +R    VC++ +N+MY
Sbjct: 346 SRIVFPVCFVCFNLMY 361


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 144 IVGRVSRGDLAPPRCRFPS 200
           ++G  SRG  A  RC  PS
Sbjct: 138 VIGGASRGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 144 IVGRVSRGDLAPPRCRFPS 200
           ++G  SRG  A  RC  PS
Sbjct: 138 VIGGASRGCTAVLRCVVPS 156


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 151 PTITVCYIYYNV 116
           P I + ++YYN+
Sbjct: 355 PCIIMVFLYYNI 366


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 196 PPLCSPTPP 222
           PP   PTPP
Sbjct: 293 PPETQPTPP 301


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 163 RDTRPTITVCYIY 125
           R  +  IT+C++Y
Sbjct: 271 RIAKAAITICFLY 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,763
Number of Sequences: 438
Number of extensions: 873
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)