Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N03
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 27 5.0
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 27 6.7
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 27 6.7
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 27 6.7
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 27 6.7
Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical pr... 26 8.8
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 8 AKKLNCHTNKTEIVGNNIRIALKVLFLFSFKMSEEGKSNLIDKSE 142
A K+ H N E + + I L+ + F +GK+N +KSE
Sbjct: 168 ACKIVSHLNSGESGADRVAIVLQADYKSEFGKDTKGKTNTTEKSE 212
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 3944 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 3998
Query: 321 HPIQDL 338
P QDL
Sbjct: 3999 PPAQDL 4004
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 3944 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 3998
Query: 321 HPIQDL 338
P QDL
Sbjct: 3999 PPAQDL 4004
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 3944 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 3998
Query: 321 HPIQDL 338
P QDL
Sbjct: 3999 PPAQDL 4004
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 141 RVVPSRI*RLRQRMRSKKRN*LKQPQRPRKKSHQIEKLTNGRMF*GQASCLKRL*RQVMN 320
RVV +R + +++ ++ L+Q Q+ ++++ QIEKL F Q + L R +
Sbjct: 4489 RVVEARWKEVSEKVDEREFTLLEQEQKAKEQNEQIEKLAK---FAAQKR--EELNRMIEQ 4543
Query: 321 HPIQDL 338
P QDL
Sbjct: 4544 PPAQDL 4549
>Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical
protein F26A3.5 protein.
Length = 313
Score = 26.2 bits (55), Expect = 8.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 251 IDEWQDVLGSGVLLKKIIKAGD 316
ID+W+D+L + ++KK ++ D
Sbjct: 268 IDDWKDLLRNNAIIKKAVEHSD 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,288,916
Number of Sequences: 27780
Number of extensions: 112334
Number of successful extensions: 294
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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