Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N02
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 96 9e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 90 6e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.030
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.48
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 1.9
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 3.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.5
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 24 4.5
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 24 4.5
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 24 5.9
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 5.9
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 24 5.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 23 7.9
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 23 7.9
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 23 7.9
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 96.3 bits (229), Expect = 9e-22
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = +2
Query: 44 MPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 220
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 221 LPPGLQVKEV 250
LPP L V EV
Sbjct: 61 LPPDLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 90.2 bits (214), Expect = 6e-20
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +2
Query: 44 MPREIKDIKDFLLKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 220
MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 221 LPPGLQVKEV 250
LPP L V EV
Sbjct: 61 LPPALTVTEV 70
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.030
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 104 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 253
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 0.48
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 160 SVPVHPRHHGQGEGRETETEFTSRSPG*GSE 252
+V H + HG+G GR E F +R+PG SE
Sbjct: 181 AVESHSKFHGKGNGR-VEIWFGARTPGGVSE 210
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 23 SDITHFIMPREIKDIKDFLLKARRKDAKS 109
SD+ + R++KD D + K RKD KS
Sbjct: 418 SDLKKYEKSRKLKDYIDDIRKGYRKDLKS 446
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 44 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSR 163
+ RE + LKA RK+A+ V+ + P K+++ SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 96 FLRAFNKKSLISLISRGMMKCVMSLTLSKP 7
+ + FNK+ ISLIS G +M + P
Sbjct: 579 YAKQFNKRRSISLISEGATGEIMKSMVDSP 608
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 24.2 bits (50), Expect = 4.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 210 SFSAFSLSVMTRVY-----RNREQRTLNXXXXXXXXXFTDLASFLRAFNKKSLIS 61
++S++ V+ +V+ N+ R LN AS L A+NKKS IS
Sbjct: 36 TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 24.2 bits (50), Expect = 4.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -1
Query: 88 RFQQKIFDILDFTRHDEVCNVAH 20
RF++KI D+L+ + +E ++H
Sbjct: 319 RFKEKILDLLEMKQQEENDRISH 341
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 136 CKVQGPLLSVPVHPRHHGQGEG 201
CKV G ++ + P HH G G
Sbjct: 76 CKVYGGSVNRGMRPSHHRDGSG 97
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 59 KDIKDFLLKARRKDAKSVKIKKNPEN 136
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 136 CKVQGPLLSVPVHPRHHGQGEG 201
CKV G ++ + P HH G G
Sbjct: 76 CKVYGGSVNRGMRPSHHRDGSG 97
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 274 LINPSHSLHFLNLE 233
LINPSHS+ F N +
Sbjct: 1187 LINPSHSVIFFNTD 1200
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 50 REIKDIKDFLLKARRKD 100
R IKD+KD KA KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 23.4 bits (48), Expect = 7.9
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 80 LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 253
+K + + K +K+K P+ + K SRF + K + SL L +VK
Sbjct: 1 MKTQTTNQKQLKVKHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVK 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,522
Number of Sequences: 5004
Number of extensions: 15571
Number of successful extensions: 55
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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