Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N02
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471    105   9e-24
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528    103   3e-23
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...   101   1e-22
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    25   9.2  
08_02_1440 - 27113396-27113418,27113976-27114102                       25   9.2  
04_03_0791 + 19685720-19685914,19686436-19686459,19686823-196872...    25   9.2  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score =  105 bits (251), Expect = 9e-24
 Identities = 48/69 (69%), Positives = 60/69 (86%)
 Frame = +2

Query: 44  MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 223
           MP++I +IKDFLL ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 224 PPGLQVKEV 250
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score =  103 bits (247), Expect = 3e-23
 Identities = 47/69 (68%), Positives = 59/69 (85%)
 Frame = +2

Query: 44  MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 223
           MP++I +IKDFLL ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 224 PPGLQVKEV 250
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score =  101 bits (242), Expect = 1e-22
 Identities = 46/68 (67%), Positives = 58/68 (85%)
 Frame = +2

Query: 47  PREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 226
           P++I +IKDFLL ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 227 PGLQVKEV 250
           PGL V+EV
Sbjct: 92  PGLTVQEV 99


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 206 KLKQSLPPGLQVKEVK*MTRIN 271
           K+K+SL  GL  KEVK + ++N
Sbjct: 146 KIKRSLKQGLYFKEVKDLRKLN 167


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 194 EKAEKLKQSLPPGLQ 238
           E A KLKQ LPPG Q
Sbjct: 25  ENANKLKQFLPPGSQ 39


>04_03_0791 +
           19685720-19685914,19686436-19686459,19686823-19687205,
           19687282-19687379,19687622-19687800,19687912-19688136,
           19688619-19688678,19688816-19688896,19688983-19689388,
           19690035-19690285
          Length = 633

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = +2

Query: 2   HEGFDSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLV 181
           H  F  VSD+  F+ PRE +      +K     A S     N     F  R   FL  L 
Sbjct: 257 HPKFRDVSDLEFFMFPREQQLTGKSAMKLNIGQAVSEGTVNNETLGYFIGRVYLFLTQLG 316

Query: 182 ITDKEKAEKLKQSLP 226
           I DK++  + +Q LP
Sbjct: 317 I-DKDRL-RFRQHLP 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,444,835
Number of Sequences: 37544
Number of extensions: 98939
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)