Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N02
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   124   2e-29
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    31   0.12 
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    28   1.2  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    28   1.2  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    28   1.2  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    27   2.7  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   3.5  
AL117200-4|CAB60584.1|  401|Caenorhabditis elegans Hypothetical ...    26   4.7  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    26   6.2  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   6.2  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   6.2  
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  124 bits (298), Expect = 2e-29
 Identities = 56/70 (80%), Positives = 65/70 (92%)
 Frame = +2

Query: 44  MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 223
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 224 PPGLQVKEVK 253
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11  FDSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVR--CSRFLYTLV 181
           + +  +I+HF M + I+D+K +  + R ++    K++ N  EN++  +R   SRF+Y   
Sbjct: 414 YGAYDNISHFQMAQYIEDLKSYGKRLRGEEWTLCKLEYNSIENIRSPLRPEGSRFIYLPT 473

Query: 182 IT 187
           +T
Sbjct: 474 VT 475


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 17  SVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 145
           ++  IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 146 NIEYITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 17  SVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 145
           ++  IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 146 NIEYITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 17  SVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 145
           ++  IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 141 NIEYITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -1

Query: 214 FQFLCLLLVRDDEGVQEPRAADXXXXXXXXXXXXYRFGIFPTRFQQKIFDILDFTRHDEV 35
           F  +  LLV+ D  +++ R  D              FG+FP R   K+   LDFT  DE 
Sbjct: 258 FIIIAYLLVKFDN-IKDTR--DNLGRSALMMAADKSFGLFPIRIFTKVDAYLDFT-DDEK 313

Query: 34  CNVA 23
            N A
Sbjct: 314 GNTA 317


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 74  FLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 184
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>AL117200-4|CAB60584.1|  401|Caenorhabditis elegans Hypothetical
           protein Y50E8A.7 protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 82  QQKIFDILDFTRHDEVCNVAHTVKTLV 2
           +Q+I  +LD+TRH+ +  V H+  T V
Sbjct: 143 RQQIEYVLDYTRHESLFYVGHSQGTAV 169


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 55  NQGYQRFFVESA*ERCQIGKDKEEP*ECKVQGPLLSVPVH 174
           N+G    +V+   +R QI KD+ +P  CKV  PL     H
Sbjct: 570 NEGDDCGYVQLVPDRMQI-KDEVQPFSCKVPRPLKGYICH 608


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 170 YTLVITDKEKAEKLKQSLPPGLQVKEVK 253
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 170 YTLVITDKEKAEKLKQSLPPGLQVKEVK 253
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 11  FDSVSDITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPEN 136
           F  VS I       E    KD   ++   D  S KIKK+PEN
Sbjct: 718 FVPVSKIEKKTDVEEDDSFKDTSNRSDNTDGSSKKIKKSPEN 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,624,100
Number of Sequences: 27780
Number of extensions: 90273
Number of successful extensions: 311
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)