Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N01
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    28   0.84 
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   4.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.9  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = +1

Query: 145 FAHSIGIIISLREIF*FGSRSQRLSI*STNNFIDLIIAITFSKYFFNDYYYNIL 306
           F HS+G  +   E     + ++R+ I + N+   + I+  +S YF+++Y++++L
Sbjct: 142 FYHSLGFDLETAE----NTGNKRVIIHTENDLQTVQISNKYSPYFYSNYFWDLL 191


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 103 WKDRQFPIYTNAMVFAHSIGIII 171
           W    FP Y++  V AHS+G ++
Sbjct: 311 WGSASFPRYSHISVVAHSLGGLV 333


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 422 FLFFVINFKMFSF*FVILIAFKVY 351
           F+FF+ NFK+ +     ++ FKVY
Sbjct: 135 FIFFLGNFKITNSMSAAMLTFKVY 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,108
Number of Sequences: 5004
Number of extensions: 23624
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)