Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M24
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.59
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 3.1
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 25 3.1
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 4.1
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 24 7.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 24 7.2
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 24 9.6
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 24 9.6
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 0.59
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 138 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLD 284
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 175 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 315
S+ T SAT S S+ A ++ ++S + NSTT A A S S+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 3.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 165 HLFFWSLSVDPIILVFLPSDSYNILLLTGY 76
++ WSL + P+I F+PS + + G+
Sbjct: 181 YVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 105 SQKVEKPVLSGQRIKTRKRDE 167
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 7.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 141 RIKTRKRDEKEKYDPNG-FRDA---LVQGLERAGGDLDAAYKFLDSAGSK 278
R + ++ +E D NG F DA +QG E G L+ + FL+ A +K
Sbjct: 209 RTMEQLKEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSFLEDAKTK 258
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.2 bits (50), Expect = 7.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 144 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFD--V 317
+ ++K+D + Y G D LV A LDA +D + + Y E I D +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430
Query: 318 LIAGGLLLPGGS 353
L+ GL P GS
Sbjct: 431 LMGTGLRRPQGS 442
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 187 TGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 315
TG A+P R+W A ++ + + + R T M++ M
Sbjct: 637 TGDASPKDRIWGTSACVTASVLQG-VSIVRVHDTKEMSKVVGM 678
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 175 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARS 306
++TLT + + R + S T+S +++A +STT RS
Sbjct: 66 ALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRS 109
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 180 HTSLSHLFFWSLSVDPIIL--VFLP 112
H SLS F LS+D IIL +F+P
Sbjct: 152 HPSLSKQVFAQLSIDGIILHTIFVP 176
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = +2
Query: 314 CAYRRRSPAARWVGVD-----GRGIPQDQY 388
CA + RS A RW G+ G+G+ +D +
Sbjct: 310 CALQLRSEAPRWKGIPIIISAGKGLDRDYF 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,200
Number of Sequences: 5004
Number of extensions: 25984
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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