Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M24
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 70 7e-13
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 0.56
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 0.56
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456... 30 0.74
07_03_0634 + 20125242-20125688 29 1.3
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 28 2.2
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 27 5.2
03_05_0600 + 26021863-26022469,26022562-26022992 27 5.2
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 27 6.9
01_03_0020 - 11698429-11699126,11699557-11700532 27 6.9
10_01_0049 - 668482-669283,669596-670131,670235-670452,670554-67... 26 9.1
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 26 9.1
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 26 9.1
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 26 9.1
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 69.7 bits (163), Expect = 7e-13
Identities = 39/92 (42%), Positives = 53/92 (57%)
Frame = +3
Query: 72 LHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 251
L +L +++ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 252 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPG 347
K ++S S L++ RYG+ F+V+ GG PG
Sbjct: 114 KSIES--SDLNFSRYGDTFFEVVFIGGRTQPG 143
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 30.3 bits (65), Expect = 0.56
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 165 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE-VIFD 314
EK+K DP GF D V A G ++ F S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 30.3 bits (65), Expect = 0.56
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 138 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE 302
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>06_01_0627 -
4567304-4567521,4567649-4567727,4567827-4568165,
4568202-4568239,4568462-4568837
Length = 349
Score = 29.9 bits (64), Expect = 0.74
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 149 LYPLTR*YWFFYLLTHTIYCY*QVM*EPLTPFASSLGLRL 30
L PLT+ WF ++ I+C Q++ PL+ S G L
Sbjct: 105 LKPLTKELWFATMILFPIHCLGQIIKSPLSKIVVSYGASL 144
>07_03_0634 + 20125242-20125688
Length = 148
Score = 29.1 bits (62), Expect = 1.3
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 151 PEKEMRKRSMTLTGSATPLSR---VWSARAVISTRLTNS*IRLARNSTTGAMARSYSMCL 321
P + + R+M S LS V S RAV S T S + T + +S+ L
Sbjct: 24 PRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATAS-PPVGVQLTVTSEHSEWSI-L 81
Query: 322 SPAVSCCPVGRCRWTG 369
SP +C P G+ +W G
Sbjct: 82 SPRKTCHPTGKVKWKG 97
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 114 PSDSYNILLLTGYVGAFNSFCEFSRTAPVQKRKKRS 7
PS+S+ L+ GY G F+S +R V ++KK++
Sbjct: 349 PSNSFANLIYVGYPGDFDSAFTTTRKRRVDRKKKQT 384
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 254 IPRFGWLETRLPALWRGHIRCAYRRRSPAAR 346
I RFG + P+ +RG+ + R RSPAAR
Sbjct: 45 ISRFGAWYSGSPSPYRGNPKSRSRSRSPAAR 75
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 367 PSIDTDPPGSRRPPA 323
PS+D +PPG PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 162 DEKEKYDPNGFRDALVQGLERAGGDLDAAYKF 257
D K +Y+ + R ALV ++R GG A F
Sbjct: 273 DGKPEYNQDAHRQALVDWVDRVGGTASAGMVF 304
>01_03_0020 - 11698429-11699126,11699557-11700532
Length = 557
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 180 DPNGFRDALVQGLER-AGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSV 356
DPN +QG A DL A F + ++ Y + + GGL+ P G +
Sbjct: 428 DPNQNTGTTIQGCAIVAAPDLAANTAFATTNYLGRPWKLYSRTVIMQSVVGGLIDPAGWM 487
Query: 357 SMDGE 371
DG+
Sbjct: 488 PWDGD 492
>10_01_0049 -
668482-669283,669596-670131,670235-670452,670554-670653,
670706-670855
Length = 601
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 80 PVNSNILYESEGRKTSIIGS 139
P +S++LYE G++++I+GS
Sbjct: 306 PSDSSLLYEMPGKESAIVGS 325
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 69 LLHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYD 182
LLH+ SI + C E+ ++SG++ R + EKE+ D
Sbjct: 163 LLHDSSIKLEC----AEQMIISGKQEMLRIKQEKEEMD 196
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -3
Query: 254 FVSRVEITARALQTLDKGVAEPVRVILLFLIS 159
F +++++ L T++K + E R+IL+FL+S
Sbjct: 326 FSFKLDVSMVELVTINKALREISRIILVFLVS 357
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 162 DEKEKYDPNGFRDALVQGLERAGG 233
D K YD N R LV ++R GG
Sbjct: 238 DGKPNYDQNAHRQELVNWVDRVGG 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,242,490
Number of Sequences: 37544
Number of extensions: 196071
Number of successful extensions: 701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -