Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M24
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    30   0.65 
Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical...    26   8.1  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 254 IPRFGWLETRLPALWR-GHIRCAYRRRSPAARWVGVDG 364
           I R G LE  LP  W+ G IR   R+ S  A W   DG
Sbjct: 124 IARLG-LEKMLPTGWKYGTIRVGLRKNSQGAPWYNTDG 160


>Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical
           protein C06C3.6 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 171 LSHLFFWSLSVDPIILVFLPSDSYNILLLTGYVGAF 64
           L +L FW+L +D I  VFL    +  +   GY+G F
Sbjct: 72  LLNLKFWTLLIDLIYTVFLIPFVFYPIFAMGYIGIF 107


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 367 PSIDTDPPGSRRPPAISTSNMTSP*RR*SSFEP 269
           P+I T PP ++ PP   TS+ T   R   ++ P
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAP 401


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 192 FRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAG 329
           FRD ++  +E   GD D + +F++   +     R GE +F+ L  G
Sbjct: 99  FRDIMISTIEDKIGDFDESRQFMNKKAA-----RQGECVFECLYPG 139


>AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical
           protein Y43F8C.10 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 114 VEKPVLSGQRIKTRKRDEKEKYDPNGFRDA 203
           VE+  L   +IK R+R ++EK + N  R+A
Sbjct: 150 VERQKLMADQIKLRRRQKREKNNLNSEREA 179


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 286  TGAMARSYSMCLSPAVSCC 342
            TG  A + S+CL P  SCC
Sbjct: 1327 TGTQACANSVCLFPRTSCC 1345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,368,235
Number of Sequences: 27780
Number of extensions: 151769
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)