Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M23
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   126   1e-30
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.62 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   1.9  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    24   7.7  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  126 bits (305), Expect = 1e-30
 Identities = 58/70 (82%), Positives = 64/70 (91%)
 Frame = -3

Query: 400 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 221
           P+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+    LPP WKY
Sbjct: 82  PELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKY 141

Query: 220 ESSTASALVA 191
           ES+TASALVA
Sbjct: 142 ESATASALVA 151


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 346 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 245
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 379 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 227
           YYL KKA  + +    N  +K+SK   I +E +  +       +  L  +W
Sbjct: 202 YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSW 252


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 370 IKKAVAMRKHLERNRKDKDSKFRLILVESRI-HRLARYYKTKSVLPPNWKYESS 212
           + K +   K+ E + K + + F      S   H  +   +TKS LPPN    SS
Sbjct: 95  VAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSALPPNVPASSS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,131
Number of Sequences: 5004
Number of extensions: 22225
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)