Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M23
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...   111   2e-25
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...   111   2e-25
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...    99   7e-22
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416     97   6e-21
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110...    27   5.6  
08_01_0970 - 9778183-9778488,9780052-9780567                           27   7.3  
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568...    27   7.3  

>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score =  111 bits (268), Expect = 2e-25
 Identities = 50/59 (84%), Positives = 54/59 (91%)
 Frame = -3

Query: 400 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 224
           P++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WK
Sbjct: 121 PEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 179


>08_01_0119 -
           951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score =  111 bits (268), Expect = 2e-25
 Identities = 50/59 (84%), Positives = 54/59 (91%)
 Frame = -3

Query: 400 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 224
           P++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WK
Sbjct: 82  PEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 140


>07_03_0978 +
           23099690-23100108,23100530-23100564,23100868-23100926,
           23101269-23101310,23102003-23102065,23102172-23102253,
           23102570-23102609,23102657-23102753
          Length = 278

 Score =   99 bits (238), Expect = 7e-22
 Identities = 45/73 (61%), Positives = 58/73 (79%)
 Frame = -3

Query: 400 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 221
           P++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+HRL RYY+    +P  +K 
Sbjct: 82  PEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAKKIPAFFKL 141

Query: 220 ESSTASALVA*VK 182
              +   +++ V+
Sbjct: 142 SKCSTFFMLSGVR 154


>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
          Length = 218

 Score = 96.7 bits (230), Expect = 6e-21
 Identities = 45/56 (80%), Positives = 48/56 (85%)
 Frame = -3

Query: 400 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 233
           P + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK    LPP
Sbjct: 139 PKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194


>06_03_1379 -
           29709532-29709843,29709951-29710112,29710193-29711086,
           29712741-29712812,29714106-29714210,29714820-29714900
          Length = 541

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 397 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 299
           DLPE    L++  AVA R  LE++R   D+ FR+
Sbjct: 24  DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57


>08_01_0970 - 9778183-9778488,9780052-9780567
          Length = 273

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 202 QTLCWIHTSS*EGAHS*SCNNELACESLIQQEST*ICCPCPSYYV-PDVSSW 354
           QTL     S+     S  C    AC    Q E+  I  P PS Y  PD +SW
Sbjct: 158 QTLDEFVNSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSW 209


>04_04_1209 +
           31755637-31755821,31756017-31756165,31756703-31756845,
           31756902-31757024
          Length = 199

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -3

Query: 394 LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRIHRLARY 260
           LP +L   ++ AV MR    R+RK+KD++  ++++E     R HR   Y
Sbjct: 122 LPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIEREREHRGGEY 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,925,484
Number of Sequences: 37544
Number of extensions: 122987
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)