Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M23
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   124   2e-29
AL132851-2|CAB60412.1|  180|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    27   6.7  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  124 bits (299), Expect = 2e-29
 Identities = 56/70 (80%), Positives = 65/70 (92%)
 Frame = -3

Query: 400 PDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 221
           P+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYYKTK  LPP WKY
Sbjct: 82  PELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKY 141

Query: 220 ESSTASALVA 191
           ES TA++LV+
Sbjct: 142 ESGTAASLVS 151


>AL132851-2|CAB60412.1|  180|Caenorhabditis elegans Hypothetical
           protein Y53H1B.4 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 160 CYFFIICVYLMSDR 119
           C +F++CVYL +DR
Sbjct: 12  CAYFVVCVYLRTDR 25


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 388 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 263
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 388 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 263
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 388 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 263
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,153,701
Number of Sequences: 27780
Number of extensions: 122781
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)