Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M22
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...   148   2e-36
11_01_0459 + 3546101-3548771,3548871-3549238                           32   0.25 
06_03_1397 - 29861108-29861206,29861683-29861748,29862066-298621...    28   5.4  
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142...    27   7.1  
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197...    27   7.1  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    27   7.1  

>02_03_0313 - 17590109-17590148,17590254-17590382,17590479-17590612,
            17590779-17590841,17590920-17591070,17593372-17593424,
            17593483-17593629,17593839-17594163,17594240-17594409,
            17595252-17595453,17596065-17596273,17597051-17597260,
            17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score =  148 bits (359), Expect = 2e-36
 Identities = 81/177 (45%), Positives = 109/177 (61%), Gaps = 7/177 (3%)
 Frame = +2

Query: 20   QQTKLFREKATMEGRLSELKTTLKTFRQELKKSLTKDIEKTFREKIYELHV-------TK 178
            ++ +L  E    +G  S  ++ +   + ELK++  KDIEK +  ++ +L V       T+
Sbjct: 695  EKDRLLSEYNRCQGTQSVYQSNISKHKLELKQTQYKDIEKRYFNQLLQLKVDGMNVQTTE 754

Query: 179  AIDKDIRDYAVALEKCLIEFHREKMENINLIIRELWRKIYRGNDIDYIEIKTEGSMNIDS 358
              +KD+  Y  AL+K L+ FH  KME IN II+ELW++ YRG DIDYI I ++      +
Sbjct: 755  MANKDLDRYYAALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDYISINSDSE---GA 811

Query: 359  ERRKYDYRVVQSKNGMEIDMRGRCSAGQKV*ACLIIRLALAETFSSRFGVLALDEPT 529
              R Y YRVV      E++MRGRCSAGQKV A LIIRLALAETF    G+LALDEPT
Sbjct: 812  GTRSYSYRVVMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPT 868


>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 223  LFQCNGVISYVFVYGFGYMKLIDL-FSESLFNILSQALFQFLPECFECSLEFTKPSFHC 50
            LF C   I  +F  G    K  ++ FS+ +  I+   L Q L  C E  +E  +   HC
Sbjct: 914  LFICRRPIDAMFKDGLSIAKFTEINFSDRILEIVDPQLQQELDLCLEAPVEVKEKDIHC 972


>06_03_1397 -
           29861108-29861206,29861683-29861748,29862066-29862155,
           29862604-29862652,29862820-29862950,29863989-29864087,
           29864169-29864204,29864467-29864557,29864814-29864994,
           29865063-29865150,29865222-29865335
          Length = 347

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 317 YIEIKTEGSMNIDSERRKYDYRVVQSKNGMEI 412
           YIE + + +  +D  R K++   V SK G+E+
Sbjct: 131 YIEYQKKRAAEVDDARLKFEISTVLSKEGIEV 162


>11_06_0155 -
           20712601-20713553,20713618-20714000,20714240-20714271,
           20714315-20714571,20714699-20714724,20714894-20715081,
           20715302-20715595,20715714-20715752,20715827-20715944,
           20716076-20716157,20716610-20716668,20717156-20717221,
           20717358-20717447,20718142-20718236
          Length = 893

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 289 SPEFPNNKVNIFHLLPVEFNQTLFQCNGVIS 197
           S  FP +   + H L +E   T ++CN + S
Sbjct: 38  SVHFPFSACQLLHKLSIETTATFYRCNSIFS 68


>06_01_0267 -
           1972988-1973148,1973275-1973403,1973881-1974024,
           1974368-1974493,1974595-1974720,1975149-1975241,
           1975465-1975606,1976747-1976878,1976943-1977080,
           1977431-1977523,1978186-1978389,1978568-1978656,
           1978839-1978988,1979088-1979253,1979355-1979576,
           1979687-1979872,1980289-1980411,1980511-1980611,
           1982005-1982155
          Length = 891

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +2

Query: 110 KKSLTKDIEKTFREKIYELHVTKAIDKDIRDYAVALEKCLIEFHREKMENINLIIRELWR 289
           +K    +IE+   E   +L VT+A     R+Y ++LE    ++H+E +++I  I+ E W+
Sbjct: 434 RKYFDDEIERITAEA--QLRVTEAE----REYKISLENEKAKYHQEYLDSIK-ILEEKWK 486


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 56  EGRLSELKTTLKTFRQELKKSLTKDIEKTFREKIYE 163
           EG        L  F+QE  K +T++   TFRE+ +E
Sbjct: 449 EGSAGRQFGNLNIFKQEEIKHMTRNYSMTFREEFHE 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,539
Number of Sequences: 37544
Number of extensions: 216723
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)