Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M21
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 130 1e-31
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 129 2e-31
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.25
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.25
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 28 0.58
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 27 1.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 1.8
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 2.3
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 2.3
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 3.1
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 4.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 7.1
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.1
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 7.1
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 7.1
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 7.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.4
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 9.4
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 9.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 9.4
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 24 9.4
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 9.4
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 130 bits (313), Expect = 1e-31
Identities = 67/123 (54%), Positives = 86/123 (69%)
Frame = +2
Query: 62 KKRSKLFYKNTIV*LSLDFHTNKWICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGI 241
K+ S++ + L+LDF TNK I +E+AII +K LRNKIAG+TTHLM+R+ VRGI
Sbjct: 10 KRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGI 69
Query: 242 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQRGYG 421
S KLQEEERER+D YVPEVS LE D + VD DTKDMLK L + I +++ PA Q +
Sbjct: 70 SFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERFR 128
Query: 422 GRR 430
R+
Sbjct: 129 RRQ 131
Score = 35.9 bits (79), Expect = 0.003
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 34 MGRVRTKTIKKAFKIILQKYY 96
MGRVRTKT K+A +++++KYY
Sbjct: 1 MGRVRTKTTKRASRVVIEKYY 21
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 129 bits (312), Expect = 2e-31
Identities = 64/105 (60%), Positives = 79/105 (75%)
Frame = +2
Query: 62 KKRSKLFYKNTIV*LSLDFHTNKWICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGI 241
K+ S++ + L+LDF TNK I +E+AII +K LRNKIAG+TTHLM+R+ VRGI
Sbjct: 10 KRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGI 69
Query: 242 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 376
S KLQEEERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 70 SFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
Score = 35.9 bits (79), Expect = 0.003
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +1
Query: 34 MGRVRTKTIKKAFKIILQKYY 96
MGRVRTKT K+A +++++KYY
Sbjct: 1 MGRVRTKTTKRASRVVIEKYY 21
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.25
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 250 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGME 116
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 29.5 bits (63), Expect = 0.25
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Frame = +2
Query: 257 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQLTQP 400
EEE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQLVYE 324
Query: 401 ATQR 412
+ R
Sbjct: 325 SFSR 328
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 0.58
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 184 NFVAKRLSRNDSNFLTYPFIGMEVKTKSYYSIFVE*F*TLF 62
+F+ K SR D N + +P + + KSY+S+F F LF
Sbjct: 786 DFITKYSSRLDLNRV-FPLLPKNISMKSYHSLFSSQFRQLF 825
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 99 YDLVLTSIPINGYVRKLLSFLLSLFATKL 185
YDL+ IP +++LLSF LS TKL
Sbjct: 282 YDLLSHCIPPTTILKELLSFFLSKVDTKL 310
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 224 SQVRGISIKLQEEERERRDNYVPEV 298
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -3
Query: 225 ECMRRLIKWVVNPAILLRRGLVGMIAISSHIHLLVWKSRLSHTIVFL*NNFERFFYGLSP 46
E + ++ K + I L L M+ I + + LS T+ + ++F++ FY + P
Sbjct: 201 EVVEKIAKRIGFTDISLSSKLTPMVKIVPRAVSAIIDAYLSSTLRYYLDSFKKNFYNVKP 260
Query: 45 NT 40
NT
Sbjct: 261 NT 262
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 235 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGMEVKT 107
SH+ + +T+ + G P V KR+ D N L F+ E++T
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALR--FVKTEIET 77
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 209 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 301
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 3.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -2
Query: 448 YNISLITSATVASLCSRLR*LQTINVTEVKH-LQHILGVRIDFNDILF*SRYFWDIIVTP 272
+N ++ + RL T +V+H L+ +L + I+ + +YF I TP
Sbjct: 439 FNFNVALPTCLVKERDRLTFDTTYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETP 498
Query: 271 FTLLFLKLNRDSSHLGVYETSHQ 203
+L + +DS+ L YE+S Q
Sbjct: 499 VRILSCRCVKDSTLLPPYESSSQ 521
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 214 TSHQMGGEPSNFVAKRLSRNDSN 146
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 314 PVLEQILLGHNCHAF 270
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 248 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 379
K E+++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/63 (20%), Positives = 34/63 (53%)
Frame = +2
Query: 224 SQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPA 403
SQ+R +++ ++ + ++ D YV + I + +S + ++LD+ NG ++ A
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVIACA 818
Query: 404 TQR 412
+++
Sbjct: 819 SKQ 821
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 280 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 188
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 7.1
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 170 LRNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 337
+R +IA F H ++R S+ ++ + E +R Y+P +S Q+ +EV ++
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431
Query: 338 TKDMLKMLDFSNI 376
K L S++
Sbjct: 432 RYKRKKGLKDSDV 444
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 31 IMGRVRTKTIKKAFKIILQKYYSMT 105
I+G + K FK+ILQK YS T
Sbjct: 3 ILGSLPNNIRKCTFKLILQKRYSHT 27
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 179 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 289
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 138 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKK 260
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 143 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 235
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 215 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 379
L+H Q+R + KL E+R+ + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 194 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD 346
+ HLM ++ + + QEE R+RR ++ E E++ +D D +
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 242 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTK 343
SI Q ++ D V + S EQD EVD+D K
Sbjct: 18 SIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYK 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,153
Number of Sequences: 5004
Number of extensions: 37436
Number of successful extensions: 128
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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