Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M21
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 124 3e-29
03_01_0066 - 537729-538163 122 1e-28
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 31 0.43
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 0.99
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 28 3.0
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 27 5.3
06_03_1259 - 28800954-28802468 27 5.3
12_02_0534 - 20103908-20105897,20106314-20107116 27 7.0
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 7.0
08_01_0057 - 383603-384256 27 9.2
07_01_0358 - 2631214-2632992 27 9.2
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 9.2
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 27 9.2
>10_07_0174 + 13815478-13815903
Length = 141
Score = 124 bits (300), Expect = 3e-29
Identities = 61/119 (51%), Positives = 84/119 (70%)
Frame = +2
Query: 62 KKRSKLFYKNTIV*LSLDFHTNKWICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGI 241
KK S+ + ++LDFHTNK + EE++I+P+K LRNK+AGFTTHLMRR+ VRGI
Sbjct: 10 KKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGI 69
Query: 242 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQRGY 418
S+KLQEEERERR ++VPE SALE + I VD +T +ML L +++ G++ Q + Y
Sbjct: 70 SLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 34 MGRVRTKTIKKAFKIILQKYYS 99
MGRVRTKT+KK + +++KYYS
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYS 22
>03_01_0066 - 537729-538163
Length = 144
Score = 122 bits (294), Expect = 1e-28
Identities = 61/113 (53%), Positives = 83/113 (73%)
Frame = +2
Query: 62 KKRSKLFYKNTIV*LSLDFHTNKWICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGI 241
KK S+ + ++LDFHTNK + EE++I+P+K LRNK+AGF+THLMRR+ VRGI
Sbjct: 10 KKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGI 69
Query: 242 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 400
S+KLQEEERERR ++VP+ SALE D I VD +T DML L +++ G+ + QP
Sbjct: 70 SLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 34 MGRVRTKTIKKAFKIILQKYYS 99
MGRVRTKT+KK + +++KYYS
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYS 22
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 31.1 bits (67), Expect = 0.43
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 399 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 295
GC + +K+ +F+I LVSE S+I+C A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 29.9 bits (64), Expect = 0.99
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 197 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 376
T LM ++I SQ SI ++E N+V A + +I S T+D+ +D++N
Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367
Query: 377 NGLQ 388
N ++
Sbjct: 368 NQVE 371
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 28.3 bits (60), Expect = 3.0
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 173 RNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD-M 349
R + G L+RRL S I + +EEE E +DN EV+ E+ S +++
Sbjct: 109 RLPVKGLKDELVRRLFES----IQSE-KEEEEEEQDNETVEVNPAANQASEIQSVSQETT 163
Query: 350 LKMLDFSNINGLQLTQPAT 406
+ + + +Q+TQ AT
Sbjct: 164 VSITEVHKETVVQVTQEAT 182
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 75 FERFFYGLSPNTTHDCGILVPNPQ 4
FER F L P CGI+ P+PQ
Sbjct: 81 FERDFCQLKPYYMDTCGIIPPSPQ 104
>06_03_1259 - 28800954-28802468
Length = 504
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 99 YDLVLTSIPINGYVRKLL 152
YDL LT++P N ++R+LL
Sbjct: 284 YDLELTTVPTNSHLRRLL 301
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 227 QVRGISIKLQEEER---ERRDNYVPEVSALEQDIIEVDSDTKDMLK 355
Q+ G+ + ++ + ERRD Y+ + +A +++VDS + M +
Sbjct: 111 QIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +2
Query: 155 IPTKPLRNKIAG---FTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIE 325
+ TK L+ + ++ + + +H ++ G KL +E++ + +V LEQD++
Sbjct: 752 LSTKELQKMVQALPQYSDQIDKLALHVEIAG---KLNSTIKEQQ---LKDVGQLEQDLVF 805
Query: 326 VDSDTKDMLKM----LDFSNINGLQL 391
D+ TK+++ LD S N L+L
Sbjct: 806 GDAGTKELINFFRTHLDISRENKLRL 831
>08_01_0057 - 383603-384256
Length = 217
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 283 LCPRSICSRTGYH*SRFGHQGYVEDA 360
L P ++CSR+G S+ GH G+ + A
Sbjct: 9 LMPATLCSRSGPPSSKHGHGGHAKRA 34
>07_01_0358 - 2631214-2632992
Length = 592
Score = 26.6 bits (56), Expect = 9.2
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 170 LRNKIAGFTTHLMRRLIHSQVRGISIKLQE-EERERRDNYVPEVSALEQDIIEVDSDT 340
LRN + F +M H + I L E ER RR+ Y+P S + DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 335 DTKDMLKMLDFSNINGLQLTQPATQ 409
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 194 TTHLMRRLIHSQVRGISIKLQEEERERRDN 283
+T MRRLIH Q+R S ++++E D+
Sbjct: 207 STSNMRRLIHQQIRRSSSSESDKKKEDADD 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,205
Number of Sequences: 37544
Number of extensions: 226818
Number of successful extensions: 560
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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