Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M21
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   124   3e-29
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    31   0.39 
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    30   0.89 
AC024696-11|AAK84510.1|  401|Caenorhabditis elegans Hypothetical...    30   0.89 
AC006697-1|AAF60390.2|  278|Caenorhabditis elegans Hypothetical ...    30   0.89 
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL117201-2|CAI79268.1|  527|Caenorhabditis elegans Hypothetical ...    29   2.1  
AL117201-1|CAB55063.1|  541|Caenorhabditis elegans Hypothetical ...    29   2.1  
U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid tran...    27   6.3  
AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical ...    27   6.3  
AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    27   6.3  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    27   6.3  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  124 bits (299), Expect = 3e-29
 Identities = 60/106 (56%), Positives = 78/106 (73%), Gaps = 3/106 (2%)
 Frame = +2

Query: 62  KKRSKLFYKNTIV*LSLDFHTNKWICEEIAIIPTKPLRNKIAGFTTHLMRRLIHSQVRGI 241
           KK S++  +     ++ DFH NK +C+E+AII +KPLRNKIAG+ THLMRR+    VRGI
Sbjct: 10  KKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGI 69

Query: 242 SIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 370
           SIKLQEEERERRDNY+PE+S ++      I+VD+DT DMLK   F+
Sbjct: 70  SIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 13/22 (59%), Positives = 20/22 (90%)
 Frame = +1

Query: 34 MGRVRTKTIKKAFKIILQKYYS 99
          M RVRTKT+KKA +++++KYY+
Sbjct: 1  MSRVRTKTVKKASRVLIEKYYT 22


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +2

Query: 206 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 382
           +R L   +V  ++ ++  EE+ R       +++  QDI + D+  ++ML+ +  +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 188 GFTTHLMRRLIHSQVRGISIKLQEEERE 271
           GFT  L  RLI +++R +   ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498


>AC024696-11|AAK84510.1|  401|Caenorhabditis elegans Hypothetical
           protein F07B7.14 protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 146 FPHISIYWYGSQD*VIL*YFCRIILNAFFMVLVLTRPMI 30
           FPH++   Y S   +   +FC      FF++++L R  +
Sbjct: 142 FPHLNFNPYKSHKTIYFTFFCNFYFEMFFLLILLVRSTV 180


>AC006697-1|AAF60390.2|  278|Caenorhabditis elegans Hypothetical
           protein W09B7.3 protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 146 FPHISIYWYGSQD*VIL*YFCRIILNAFFMVLVLTRPMI 30
           FPH++   Y S   +   +FC      FF++++L R  +
Sbjct: 19  FPHLNFNPYKSHKTIYFTFFCNFYFEMFFLLILLVRSTV 57


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 203 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 313
           ++ R ++SQ+  +SI L+ E +ER+D+Y   + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 184 NFVAKRLSRNDSNFLTYPFIGMEVKTKSYYSI 89
           N+  + +S N SN+LTYPF G+ ++ K +Y +
Sbjct: 8   NYCDRGISPNASNYLTYPFDGLCLQ-KFFYQL 38


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 184 NFVAKRLSRNDSNFLTYPFIGMEVKTKSYYSI 89
           N+  + +S N SN+LTYPF G+ ++ K +Y +
Sbjct: 28  NYCDRGISPNASNYLTYPFDGLCLQ-KFFYQL 58


>AL117201-2|CAI79268.1|  527|Caenorhabditis elegans Hypothetical
           protein Y53H1C.1b protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 228 WECMRRLIKWVVNPAILLRRGLVGMIAISSHIHLLVW 118
           W CM  +I  ++   I +  G V  +A+++ + L+VW
Sbjct: 23  WSCMSYVIANIIGAGIFITPGTVLKLALTNGMALVVW 59


>AL117201-1|CAB55063.1|  541|Caenorhabditis elegans Hypothetical
           protein Y53H1C.1a protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 228 WECMRRLIKWVVNPAILLRRGLVGMIAISSHIHLLVW 118
           W CM  +I  ++   I +  G V  +A+++ + L+VW
Sbjct: 23  WSCMSYVIANIIGAGIFITPGTVLKLALTNGMALVVW 59


>U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid
           transporter protein 4 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 228 WECMRRLIKWVVNPAILLRRGLVGMIAISSHIHLLVW 118
           W CM  +I  ++   I +  G +     S+ + LLVW
Sbjct: 23  WSCMSYVIANIIGAGIFITPGPILQYTFSNGLALLVW 59


>AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical
           protein H04D03.2b protein.
          Length = 749

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 216 RRLIKWVVNPAILLRRGLVGMIAISSHIHLLVWK 115
           R+L+KW      LL+        +  H+ +L+WK
Sbjct: 114 RQLVKWAPREPKLLQAPATSSEQVPGHVEVLMWK 147


>AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical
           protein H04D03.2a protein.
          Length = 747

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 216 RRLIKWVVNPAILLRRGLVGMIAISSHIHLLVWK 115
           R+L+KW      LL+        +  H+ +L+WK
Sbjct: 114 RQLVKWAPREPKLLQAPATSSEQVPGHVEVLMWK 147


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 277
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 277
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,252,333
Number of Sequences: 27780
Number of extensions: 202636
Number of successful extensions: 592
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)