Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M20
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    30   1.3  
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875...    27   9.5  
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266     27   9.5  

>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 354 QEIIQITSYSE*LHCC-ECPKWI*YNTLYLGNFVYWL 461
           Q +I++  Y    HC   C  W+ +NTL+  +F YW+
Sbjct: 53  QIVIKLYQYH---HCSPSCTSWVIFNTLFGLSFTYWM 86


>09_04_0155 -
           15185985-15186755,15187049-15187236,15187479-15187517,
           15187741-15187768
          Length = 341

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 209 CLATKLNINSHQIITKHAYG*SHQ 138
           C   KL  NS ++++ H YG  HQ
Sbjct: 303 CEICKLQCNSEKVLSDHRYGKKHQ 326


>01_05_0322 +
          20932151-20932470,20933076-20933146,20933259-20933266
          Length = 132

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 70 NCMKCTYITFCKKKNC 23
          +C  C Y+ FCK++ C
Sbjct: 10 SCRSCQYVNFCKREAC 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,591
Number of Sequences: 37544
Number of extensions: 228363
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)