Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M19
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   150   1e-37
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   150   1e-37
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   0.90 
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    26   3.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   3.6  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   8.4  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  150 bits (364), Expect = 1e-37
 Identities = 68/120 (56%), Positives = 81/120 (67%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           K+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  S
Sbjct: 8   KSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           R+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y G TE  G
Sbjct: 68  RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  150 bits (364), Expect = 1e-37
 Identities = 68/120 (56%), Positives = 81/120 (67%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           K+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  S
Sbjct: 8   KSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           R+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y G TE  G
Sbjct: 68  RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 31  RSKLWIPGLQNSHEVFCGHCADIIQEY*KWDR 126
           + K ++PG++ S     G C+ + + Y KW+R
Sbjct: 664 KQKKFVPGMKLSKREIDGWCSLVFEAYQKWNR 695


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 70  EVFCGHCADIIQEY*KWDRESSKNKQY 150
           E  C  C DI++E+ ++DRE  +  +Y
Sbjct: 242 EECCYVCPDIVKEFSRFDREPDRYLKY 268


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 296 VTSLLD-NRTISRYFGVLYLFLSWTTRR 216
           V   LD N  + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAA 405
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,230
Number of Sequences: 5004
Number of extensions: 43284
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)