Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M19
         (497 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132972-1|AAI32973.1|  297|Homo sapiens ribosomal protein L5 pr...   199   4e-51
BC132970-1|AAI32971.1|  297|Homo sapiens ribosomal protein L5 pr...   199   4e-51
BC109370-1|AAI09371.1|  297|Homo sapiens ribosomal protein L5 pr...   199   4e-51
AL162740-1|CAI22505.1|  297|Homo sapiens ribosomal protein L5 pr...   199   4e-51
AK222604-1|BAD96324.1|  297|Homo sapiens ribosomal protein L5 va...   199   4e-51
AB208980-1|BAD92217.1|  303|Homo sapiens ribosomal protein L5 va...   199   4e-51
U14966-1|AAA85654.1|  297|Homo sapiens ribosomal protein L5 prot...   197   2e-50
BC001882-1|AAH01882.1|  101|Homo sapiens RPL5 protein protein.        177   1e-44
AL162740-2|CAI22506.1|  126|Homo sapiens ribosomal protein L5 pr...   110   3e-24

>BC132972-1|AAI32973.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  199 bits (486), Expect = 4e-51
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 68  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127


>BC132970-1|AAI32971.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  199 bits (486), Expect = 4e-51
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 68  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127


>BC109370-1|AAI09371.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  199 bits (486), Expect = 4e-51
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 68  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127


>AL162740-1|CAI22505.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  199 bits (486), Expect = 4e-51
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 68  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127


>AK222604-1|BAD96324.1|  297|Homo sapiens ribosomal protein L5
           variant protein.
          Length = 297

 Score =  199 bits (486), Expect = 4e-51
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 68  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127


>AB208980-1|BAD92217.1|  303|Homo sapiens ribosomal protein L5
           variant protein.
          Length = 303

 Score =  199 bits (486), Expect = 4e-51
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 15  KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 74

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 75  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 134


>U14966-1|AAA85654.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score =  197 bits (481), Expect = 2e-50
 Identities = 86/120 (71%), Positives = 99/120 (82%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           RIEGD IVCA Y+HELP+YG+KVGLTNYAAAYCTG             D +Y G  EVTG
Sbjct: 68  RIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTG 127


>BC001882-1|AAH01882.1|  101|Homo sapiens RPL5 protein protein.
          Length = 101

 Score =  177 bits (432), Expect = 1e-44
 Identities = 76/91 (83%), Positives = 88/91 (96%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+
Sbjct: 8   KNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYA 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAA 408
           RIEGD IVCAAY+HELP+YG+KVGLTNYAAA
Sbjct: 68  RIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98


>AL162740-2|CAI22506.1|  126|Homo sapiens ribosomal protein L5
           protein.
          Length = 126

 Score =  110 bits (264), Expect = 3e-24
 Identities = 47/77 (61%), Positives = 58/77 (75%)
 Frame = +1

Query: 265 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXX 444
           +IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG        
Sbjct: 1   MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60

Query: 445 XXXXXDSLYTGATEVTG 495
                D +Y G  EVTG
Sbjct: 61  NRFGMDKIYEGQVEVTG 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,015,968
Number of Sequences: 237096
Number of extensions: 1697222
Number of successful extensions: 8013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8013
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)