Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M19
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   186   8e-48
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    28   3.3  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   7.6  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    27   10.0 

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  186 bits (453), Expect = 8e-48
 Identities = 86/120 (71%), Positives = 95/120 (79%)
 Frame = +1

Query: 136 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 315
           KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV  Q+AYS
Sbjct: 8   KNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYS 67

Query: 316 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 495
           +IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG             DS Y G  E+TG
Sbjct: 68  KIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTG 127


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 323 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 427
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 323 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 427
           RV+  ++L    P+L N+ A VSRW  +   LP  + CC
Sbjct: 77  RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 244 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 363
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 361  VHESRQHRQCDHPQCVSMQLDR*HLYWITVQSVGTLECCICFYPGQRGV-CEHSSQF 194
            VH S +H QC HP      LD   +   +++S    E C+    G   V C+H   F
Sbjct: 1084 VHSSIEHLQCPHPYL--NPLDHPQMCITSLKSCSDSETCLKTTSGGNFVCCQHPPSF 1138


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  KWDRESSKNKQYFKRYQVKFKRRREGKTDYYARKR 219
            +++++  KN+Q  K YQ++ +  R+ K D  A  R
Sbjct: 1639 EYNKQLKKNQQIIKEYQIECEEARQAKEDIAALLR 1673


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 235 KNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 327
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 127 ESSKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 306
           ++SKN    K+Y   FK +            +  + K  YN P +R +++ S+     +V
Sbjct: 780 KNSKNPNLLKQYDEIFKTQEASGIIESVTPNMKSETKYNYNMP-HRAVIKESSNTTKVRV 838

Query: 307 AY 312
            Y
Sbjct: 839 VY 840


>U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical
           protein F52E4.1a protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 29  GALNYGSPGCRIRTRSSVGTVRILFRNIRNGIVK 130
           G +NY  P   +    + G V ILFRN +   V+
Sbjct: 445 GDINYAWPTAEVAVMGAKGAVSILFRNDKEHAVQ 478


>U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical
           protein F52E4.1b protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 29  GALNYGSPGCRIRTRSSVGTVRILFRNIRNGIVK 130
           G +NY  P   +    + G V ILFRN +   V+
Sbjct: 431 GDINYAWPTAEVAVMGAKGAVSILFRNDKEHAVQ 464


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  EVFCGHCADIIQEY*KWDRESSK 138
           E FC  C D+++E+ K+D +++K
Sbjct: 236 EKFCYVCPDVMKEFVKYDTDAAK 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,200,110
Number of Sequences: 27780
Number of extensions: 256081
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)