Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M17
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   1.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   3.2  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   9.6  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   9.6  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.6  

>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 149 SHLFGCGVCFSTVR-CHYYY*VSKRKLEIKN*LQHVLRTTQN 27
           +H +GC V    +  CH     S+RKL I+  L H+L+ TQ+
Sbjct: 551 AHPYGCRVIQRAIEHCH-----SERKLIIEELLPHILKLTQD 587


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 467 CVVLSGRFFRFSWWG 423
           CVV +G    FSWWG
Sbjct: 750 CVVYTGGSSNFSWWG 764


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -2

Query: 182 FLNWRFLDFRGSHLFGCGVCFSTVRCHYYY*VSKRKLEIKN*LQHVLRTTQNNVHRTNP 6
           +L  R L  +  ++    +  S  RC++   V+KRK  +   L+ V+R  +  +++ +P
Sbjct: 146 YLEGRVLPLQTVYMQMVDIQESMDRCYFESEVNKRKTRLGARLEQVMRDVELEIYKDSP 204


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 150 STEVKESPI-KKSPTKKTEVPESNGKENG 233
           S+EVKE    +K+  ++ + P+ +G+ENG
Sbjct: 222 SSEVKEEEAGEKTDVEEKKDPDKHGRENG 250


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 136 PKR*LPRKSRNLQLRNLPPKKLKYLRAMV 222
           P+R    + RN + RN P   L YL  M+
Sbjct: 53  PRRRRMNRRRNERSRNFPSNHLSYLEDMI 81


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 218 IALRYFSFFGGRFLNWRFLDFRGSHLFGCGVCFSTVR 108
           + L Y S    + L+W  ++ R S  F C  C S+ R
Sbjct: 287 VNLEYISVVLNQILDWTPVELRHSIFFCCLRCLSSSR 323


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 156 EVKESPIKKSPTKK 197
           E +ESP+K  PTKK
Sbjct: 892 ETRESPMKNKPTKK 905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,174
Number of Sequences: 5004
Number of extensions: 30117
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)