Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M17
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 33 0.11
05_04_0381 - 20794385-20794612,20794671-20794796 30 1.0
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 29 1.8
03_06_0599 + 34984869-34985319,34986581-34987563 29 1.8
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 2.4
07_01_0862 - 7172083-7172931 29 3.2
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 29 3.2
07_03_1028 - 23378140-23378802 28 4.2
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 4.2
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 28 5.6
09_04_0168 - 15295442-15295477,15295478-15295552,15295660-152957... 27 7.4
07_01_0570 + 4228567-4228852,4229198-4229217 27 7.4
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 27 7.4
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -1
Query: 489 EPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPPPQRQW 355
+ S VV R+F P G PPP P R +S L PPP QW
Sbjct: 199 QQSTVVASRAFDAHRPPFHSAGLPPP--PR-RSMSLLLPPPPAQW 240
>05_04_0381 - 20794385-20794612,20794671-20794796
Length = 117
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2
Query: 368 GGGDREDNSRKEGESGGGNPTS*SGRSDRLK 460
G ED S KEG GG + GR DRLK
Sbjct: 81 GDWAEEDGSAKEGGGGGDEVEAGGGRDDRLK 111
>10_08_0161 +
15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 368 GGGDREDNSRKEGESGGGNPTS*SG-RSDRLKLRNLTTSLGSVQCVD 505
GGGD++D +KEG GGG+ G ++D+ K + S+ V D
Sbjct: 244 GGGDKKD--KKEGGGGGGDKKDAGGEKTDKDKSAAASASVAPVPLAD 288
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 420 PPPLSPSFRELSSLSPPPQRQW 355
PPP P RE S SPPPQ Q+
Sbjct: 407 PPPPPPHQRETPSPSPPPQPQF 428
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 120 KADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 227
+A+ A E+ + E ESP K + +E PES KE
Sbjct: 736 RANEAKEKAATAENSESPESKKEKENSENPESKEKE 771
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 423 FPPPLSPSFRELSSLSPPPQ 364
+PPPL P + L SPPPQ
Sbjct: 172 YPPPLPPKKKPLPPPSPPPQ 191
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 492 TEPSEVVRLRSFKRSLLPLQLVGFPPPLSPSFRELSSLSPP 370
T + ++RL +R LLPL + PPP +P S +PP
Sbjct: 3 TAAAALLRLSRSRRPLLPLSSLRLPPP-APYHHHSHSQTPP 42
>07_03_1028 - 23378140-23378802
Length = 220
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 332 RDRSEEEIHCR*GGG--DREDNSRKEGESG 415
R R++EE H R GG RE+ RK+G G
Sbjct: 112 RSRTKEESHARGGGAAPRRENKDRKDGAGG 141
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 120 KADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGT 236
+A P EV E + SP KS E S KENGT
Sbjct: 1160 RAGQNPSEVVDDEDQRSPPPKSDHSLIEKESSEVKENGT 1198
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +3
Query: 144 VTSTEVKESPIKKSPTKKT------EVPESNGKENGTXXXXXXXXXXXXNGDAEESNDAT 305
V S+E K P +K +K T + +S+ KE+G NGD EE ++
Sbjct: 113 VESSEEKAPPKEKEESKDTFDDANGKTEQSSAKEDGDSESGSGQSDGSKNGDDEEKSEEK 172
Query: 306 ENGDVTE 326
++ + ++
Sbjct: 173 KDDEQSD 179
>09_04_0168 -
15295442-15295477,15295478-15295552,15295660-15295722,
15296095-15296319,15296421-15296562,15296678-15296839,
15298148-15298320,15300352-15300882
Length = 468
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 501 THCTEPSEVVRLRSFKRSLLPLQLVGFPPPLSPSF 397
T C PS V R+ K L P Q+ + P+ PSF
Sbjct: 295 TRCYCPSAEVSKRALKAGLQPSQIKVYGLPVRPSF 329
>07_01_0570 + 4228567-4228852,4229198-4229217
Length = 101
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 429 VGFPPPLSPSFRELSSLSPPP 367
+GF PPL P LS PPP
Sbjct: 47 IGFLPPLPPPHYPLSEFLPPP 67
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 368 GGGDREDNSRKEGESGGGNPTS*SGR 445
G D EDN + GGNPTS SG+
Sbjct: 672 GDDDEEDNIDETNSVLGGNPTSISGQ 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,113
Number of Sequences: 37544
Number of extensions: 227815
Number of successful extensions: 1102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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