Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M17
         (546 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A pr...    31   2.0  
BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A (5...    31   2.0  
BC004937-1|AAH04937.1|  174|Homo sapiens NOL5A protein protein.        31   2.0  
AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A (5...    31   2.0  
Y12065-1|CAA72789.1|  602|Homo sapiens hNop56 protein.                 31   2.6  

>BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A
           protein.
          Length = 594

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 123 ADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESNDA 302
           + + PEE    E+ E P KK   K  EVP+ NG E+ +            + +   S+D 
Sbjct: 465 SSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDL 522

Query: 303 TENGDVTEV 329
            E    T +
Sbjct: 523 EETAGSTSI 531


>BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 123 ADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESNDA 302
           + + PEE    E+ E P KK   K  EVP+ NG E+ +            + +   S+D 
Sbjct: 465 SSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDL 522

Query: 303 TENGDVTEV 329
            E    T +
Sbjct: 523 EETAGSTSI 531


>BC004937-1|AAH04937.1|  174|Homo sapiens NOL5A protein protein.
          Length = 174

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 123 ADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESNDA 302
           + + PEE    E+ E P KK   K  EVP+ NG E+ +            + +   S+D 
Sbjct: 45  SSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDL 102

Query: 303 TENGDVTEV 329
            E    T +
Sbjct: 103 EETAGSTSI 111


>AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 123 ADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESNDA 302
           + + PEE    E+ E P KK   K  EVP+ NG E+ +            + +   S+D 
Sbjct: 465 SSSTPEECE--EMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDL 522

Query: 303 TENGDVTEV 329
            E    T +
Sbjct: 523 EETAGSTSI 531


>Y12065-1|CAA72789.1|  602|Homo sapiens hNop56 protein.
          Length = 602

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 123 ADAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESNDA 302
           + + PEE   T   E P KK   K  EVP+ NG E+ +            + +   S+D 
Sbjct: 473 SSSTPEECEETS--EKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSSDL 530

Query: 303 TENGDVTEV 329
            E    T +
Sbjct: 531 EETAGSTSI 539


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,755,347
Number of Sequences: 237096
Number of extensions: 1173219
Number of successful extensions: 4076
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)