Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M16
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 283 4e-77
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 283 4e-77
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 283 4e-77
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 241 1e-64
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 175 8e-45
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 175 8e-45
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 158 1e-39
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 134 2e-32
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 77 5e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 77 5e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 77 5e-15
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 77 7e-15
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 77 7e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 56 1e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 55 2e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 4e-08
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 44 6e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 43 8e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 37 3e-04
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 37 0.005
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 37 0.005
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.062
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.062
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.44
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 30 0.76
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 30 0.76
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 0.76
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.0
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 2.3
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 3.1
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 3.1
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ... 28 3.1
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ... 28 3.1
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 27 7.1
AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 9.4
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 9.4
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 26 9.4
J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein ( C.ele... 26 9.4
CU457740-1|CAM36331.1| 122|Caenorhabditis elegans Hypothetical ... 26 9.4
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 9.4
AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kina... 26 9.4
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 283 bits (694), Expect = 4e-77
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
+EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 185 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 364
LKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 365 FEAGISKNGQTREHAL 412
FEAGISKNGQTREHAL
Sbjct: 123 FEAGISKNGQTREHAL 138
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 283 bits (694), Expect = 4e-77
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
+EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 185 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 364
LKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 365 FEAGISKNGQTREHAL 412
FEAGISKNGQTREHAL
Sbjct: 123 FEAGISKNGQTREHAL 138
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 283 bits (694), Expect = 4e-77
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
+EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 185 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 364
LKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 365 FEAGISKNGQTREHAL 412
FEAGISKNGQTREHAL
Sbjct: 123 FEAGISKNGQTREHAL 138
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 241 bits (590), Expect = 1e-64
Identities = 111/115 (96%), Positives = 114/115 (99%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
+EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 185 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 349
LKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 175 bits (427), Expect = 8e-45
Identities = 79/135 (58%), Positives = 100/135 (74%)
Frame = +2
Query: 8 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 187
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 188 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 367
+ ERERG+T+DI FET + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 368 EAGISKNGQTREHAL 412
E G GQT+EHAL
Sbjct: 287 ETGFENGGQTKEHAL 301
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 175 bits (427), Expect = 8e-45
Identities = 79/135 (58%), Positives = 100/135 (74%)
Frame = +2
Query: 8 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 187
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 188 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 367
+ ERERG+T+DI FET + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 368 EAGISKNGQTREHAL 412
E G GQT+EHAL
Sbjct: 305 ETGFENGGQTKEHAL 319
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 158 bits (384), Expect = 1e-39
Identities = 69/134 (51%), Positives = 98/134 (73%)
Frame = +2
Query: 11 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 190
K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 107 KEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTND 166
Query: 191 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 370
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE
Sbjct: 167 EEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFE 226
Query: 371 AGISKNGQTREHAL 412
G + GQTREH++
Sbjct: 227 TGFDRGGQTREHSM 240
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 134 bits (324), Expect = 2e-32
Identities = 61/65 (93%), Positives = 63/65 (96%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
+EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 185 LKAER 199
LK +
Sbjct: 63 LKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 77.0 bits (181), Expect = 5e-15
Identities = 50/135 (37%), Positives = 67/135 (49%)
Frame = +2
Query: 8 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 187
+K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 DKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDNA 90
Query: 188 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 367
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 PEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 150
Query: 368 EAGISKNGQTREHAL 412
QTREH L
Sbjct: 151 P-------QTREHLL 158
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 77.0 bits (181), Expect = 5e-15
Identities = 50/135 (37%), Positives = 67/135 (49%)
Frame = +2
Query: 8 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 187
+K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 47 DKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDNA 91
Query: 188 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 367
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 92 PEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 368 EAGISKNGQTREHAL 412
QTREH L
Sbjct: 152 P-------QTREHLL 159
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 77.0 bits (181), Expect = 5e-15
Identities = 50/135 (37%), Positives = 67/135 (49%)
Frame = +2
Query: 8 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 187
+K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 47 DKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDNA 91
Query: 188 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 367
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 92 PEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 368 EAGISKNGQTREHAL 412
QTREH L
Sbjct: 152 P-------QTREHLL 159
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 76.6 bits (180), Expect = 7e-15
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 11 KVHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
K+++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 185 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 364
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 365 FEAGISKNGQTREHAL 412
E QT+EH +
Sbjct: 146 ME-------QTKEHLI 154
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 76.6 bits (180), Expect = 7e-15
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 11 KVHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 184
K+++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 185 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 364
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 365 FEAGISKNGQTREHAL 412
E QT+EH +
Sbjct: 146 ME-------QTKEHLI 154
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 56.0 bits (129), Expect = 1e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 203 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 361
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 55.2 bits (127), Expect = 2e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 203 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 361
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.0 bits (124), Expect = 4e-08
Identities = 38/113 (33%), Positives = 53/113 (46%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 203 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 361
RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 43.6 bits (98), Expect = 6e-05
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 175
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 176 LDKLKAERERG----ITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 343
L+K E +G T+++ K + + + +ID+PGH DF + D A+++
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVV 140
Query: 344 VAAGTG 361
V +G
Sbjct: 141 VDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 43.2 bits (97), Expect = 8e-05
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 175
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 176 LDKLKAERERG----ITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 343
L+K E +G T+++ K + + + +ID+PGH DF + D A+++
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVV 140
Query: 344 VAAGTG 361
V +G
Sbjct: 141 VDCVSG 146
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.1 bits (82), Expect(2) = 3e-04
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 146 GKGSFKYAWVLDKLKAERERGITIDIALWKFETGK-YYVTIIDAPGHRDFIKNMITGTSQ 322
GK + A ++ A GIT I + E K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 323 ADCAVLIVAAGTG 361
AD VL+VAA G
Sbjct: 228 ADIVVLVVAADDG 240
Score = 23.0 bits (47), Expect(2) = 3e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 26 IVVIGHVDSGKST 64
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 37.1 bits (82), Expect = 0.005
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 HI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 193
HI N+ ++ HVD GK++ L+ I R G +Y +D +
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MDSRED 63
Query: 194 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 346
E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 64 EQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 37.1 bits (82), Expect = 0.005
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 HI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 193
HI N+ ++ HVD GK++ L+ I R G +Y +D +
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MDSRED 63
Query: 194 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 346
E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 64 EQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.062
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 203 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 361
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.5 bits (73), Expect = 0.062
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 203 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 361
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.44
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 254 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 349
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 29.9 bits (64), Expect = 0.76
Identities = 31/131 (23%), Positives = 56/131 (42%)
Frame = +2
Query: 20 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 199
+N+ ++GHVDSGK+T T + + + F+ A R
Sbjct: 14 LNLGILGHVDSGKTTLTRRIA------ELGSTSAFDAHATSTTTDGI------------R 55
Query: 200 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 379
+ + + +G+ + +ID PGH I+ ++ ++ D A++I+ + AGI
Sbjct: 56 RNTLDLGFSTMTSLSGRR-LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGI 109
Query: 380 SKNGQTREHAL 412
QT EH L
Sbjct: 110 QP--QTAEHLL 118
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 277 RSVDDGDIVFAGFELPESNIDGDTTLTLGL 188
R ++DGDIV + F+ P I D T++L L
Sbjct: 260 RFIEDGDIVSSFFDRPSIRIQSDNTVSLRL 289
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 263 IIDAPGHRDFIKNMITGTSQADCAVLIV 346
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 29.5 bits (63), Expect = 1.0
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVL 178
++ + + + V+G D GKST G L C G K I F + E+ G K + V
Sbjct: 164 QQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVC 220
Query: 179 DKLKAERERGITIDIALWKF----ETGKYYVTIIDAPGHRDFIKNMITGTS--QADCAVL 340
+ + RG ++ A E VT+ID G + K I G + A L
Sbjct: 221 NDVIGFDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACL 280
Query: 341 IVAAGTG 361
+VAA G
Sbjct: 281 VVAADRG 287
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 101 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 101 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 20 INIVVIGHVDSGKSTTT 70
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 230 WKFETGKYY-VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 352
++ E G+ V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 63 YEIEEGRVLMVQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 2.3
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Frame = +2
Query: 14 VHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEMGKGSFKYAWVL-- 178
+ + V+G+VD+GKST G L + G RT K E G+ S +L
Sbjct: 139 IEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSVGNDILGF 198
Query: 179 ----DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS--QADCAVL 340
+ + +D + K VT ID GH ++K I G + D +L
Sbjct: 199 DVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTIFGMTGHMPDYTML 257
Query: 341 IVAAGTG 361
++ A G
Sbjct: 258 MIGANMG 264
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 170 WVLDKLKAERERGITIDIALWKFETGKYYVTII 268
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical protein
F14F4.3b protein.
Length = 1427
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 346 DNKHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPESNID 215
D++H AV + +S+H +++ S S + DIV E +S+ D
Sbjct: 1353 DDQHSAVVVGENSEHSMEKSSQGSSQESDDIVKVENEQKDSSDD 1396
>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical protein
F14F4.3a protein.
Length = 1400
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 346 DNKHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPESNID 215
D++H AV + +S+H +++ S S + DIV E +S+ D
Sbjct: 1326 DDQHSAVVVGENSEHSMEKSSQGSSQESDDIVKVENEQKDSSDD 1369
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 170 WVLDKLKAERERGITIDIALWKFETGKYYVTII 268
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 170 WVLDKLKAERERGITIDIALWKFETGKYYVTII 268
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
protein F14F4.3b protein.
Length = 1427
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 346 DNKHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPESNID 215
D++H AV + +S+H +++ S S + DIV E +S+ D
Sbjct: 1353 DDQHSAVVVGENSEHSMEKSSQGSSQESDDIVKVENEQKDSSDD 1396
>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
protein F14F4.3a protein.
Length = 1400
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 346 DNKHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPESNID 215
D++H AV + +S+H +++ S S + DIV E +S+ D
Sbjct: 1326 DDQHSAVVVGENSEHSMEKSSQGSSQESDDIVKVENEQKDSSDD 1369
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 14 VHINIVVIGHVDSGKSTTTGHLIY 85
+ + V+G+VD+GKST G L +
Sbjct: 139 IEARVAVVGNVDAGKSTLLGVLTH 162
>AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical
protein Y73C8B.3 protein.
Length = 308
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 373 GFEFTSTSGDNKHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAG 242
GF FT+ D KH + + S+ +LDE+ + DG + + G
Sbjct: 74 GFTFTNEYPDQKHINIERQNYSNALLDELGI-----DGKMAYIG 112
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 151
EEK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1303 EEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 151
EEK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1303 EEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 23 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 202
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 51 PASPQQLVT*STNAVVSTNVPSKSS 125
P+SPQQL NA STNV + S
Sbjct: 120 PSSPQQLHLAFANATTSTNVTNAKS 144
>J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein (
C.elegans casein kinaseII-alpha gene, complete cds. ).
Length = 360
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 208 YHHRY-CSLEVRNRQILCHHHRRSWTQRFHQEHDH 309
Y RY L+ R IL H R+ W + H E+ H
Sbjct: 256 YIARYHIDLDPRFNDILGRHSRKRWERFIHAENQH 290
>CU457740-1|CAM36331.1| 122|Caenorhabditis elegans Hypothetical
protein C50E10.1 protein.
Length = 122
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 399 RVCPFFEIPASNSPVPAATISTAQSA*DVPVIMF 298
++ F+ IP+ N P +AT ST+ ++P I F
Sbjct: 53 QMASFWNIPSPNPPATSATSSTSPEE-EIPCICF 85
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 5 EEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 151
EEK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1303 EEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kinase
protein 3 protein.
Length = 360
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 208 YHHRY-CSLEVRNRQILCHHHRRSWTQRFHQEHDH 309
Y RY L+ R IL H R+ W + H E+ H
Sbjct: 256 YIARYHIDLDPRFNDILGRHSRKRWERFIHAENQH 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,487,971
Number of Sequences: 27780
Number of extensions: 197053
Number of successful extensions: 787
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -