Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M15
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   1.8  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   2.4  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   2.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   3.2  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   3.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   3.2  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   3.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   4.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   5.6  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     24   7.5  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    24   7.5  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   7.5  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    23   9.8  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    23   9.8  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 141 SVLGPAKRIMFPLDSRNSSSVPRQTDRRPKENTWPD 248
           S++    R +  LDS+ SSS    TD  P+E   P+
Sbjct: 391 SLIAALAREISQLDSKASSSSESSTDGNPQEKKLPE 426


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 120 RP*LNVSTQGLFRSTELIAFRLTEASSSDWPPERKVTPSC 1
           +P L   T G   +T+++   LTE+  S   P  K  P C
Sbjct: 554 KPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPIC 593


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 181 SNGNIILFAGPSTEHGSLESAAVAER 104
           S  + ++F GPS  H SL+   +AE+
Sbjct: 382 SEASEVVFVGPSLAHLSLQCRGIAEK 407


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 211 KRTGVPRKIRGRISDRFGCRSRTLCC*PRVLK 306
           K + + R++  R  D F C  R LCC   +L+
Sbjct: 869 KPSELERELFSRSPDLFNCLPRLLCCIAPILQ 900


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 273 ASAPKPVTDPATYFPWD 223
           A++P  VTD A YF W+
Sbjct: 294 ATSPLSVTDNANYFQWE 310


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 205 GTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQIDR-VDSIQVNGS 47
           G+LDE L    + I+F   S + G  + +    +Q P    + R VD++  N S
Sbjct: 55  GSLDERLFLTEDDIIFHDRSIQLGYFDPSLSERKQSPPGKSLHRFVDNLNPNSS 108


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 104 TFSYGRALQASVLRAWAGKEDNVPVGQQELIKRAKANGQAS 226
           TFSY ++L+ +    W+      P+     IK +  NG++S
Sbjct: 35  TFSYVQSLRRAKATVWSDIGRVAPLHSSPSIKSSSQNGKSS 75


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
 Frame = -1

Query: 280 ESGFGTQTCH*SGHVFSLGR----LSVCLGTLDEFLLSNGNIILFA-----GPSTEHGSL 128
           +  FG +  H  G VF   R     S+ LGT  + L  +  I+LFA      PS   GSL
Sbjct: 309 QEDFGWKLVH--GDVFRPPRRPMLFSILLGTGAQLLFMSSGIVLFAIFGIVAPS-RRGSL 365

Query: 127 ESAAVA 110
            +A VA
Sbjct: 366 ATATVA 371


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 187  GTHQACQGKRTGVPRKIRGRISDRFGCRS 273
            G  Q C+ + TG  RKI G+ +D+    S
Sbjct: 1402 GNCQLCRTRVTGYKRKIYGKKADKIAMDS 1430


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 161  EDNVPVGQQELIKRAKANGQASQGKYV 241
            +DN PV  Q+L+K  +A+ Q S  + V
Sbjct: 989  KDNSPVTLQDLVKNLEASEQQSLQRLV 1015


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 326 ILFVCVCFNTRG*QQRVRLRHPNLSLIRPRIFLGTPVR 213
           ++ +  C+  R  Q  VR  H N S+ + R+ L   VR
Sbjct: 395 LISMATCYGFRNIQNLVRRVHGNSSVRKGRVLLKKRVR 432


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 135 PCSVLGP-AKRIMFPLDSRNSSSVPRQTDR 221
           P + LG  AKRI    DS+++ SVP +  R
Sbjct: 162 PHAFLGDSAKRIRVDSDSKDAKSVPSENGR 191


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 134 SVLRAWAGKEDNVPVGQQELIKR---AKANGQASQGKY 238
           SVL +W   E NV   QQE +     A+ N + S  K+
Sbjct: 188 SVLDSWVHHEANVRAEQQERLVEDVLARVNSKVSTQKF 225


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 190 FLLSNGNIILFAGPSTEHGSLESA-AVAERQYPGSLQIDRVDSI 62
           F L NG  I+         +L  A   AE+  P  + ID +DSI
Sbjct: 286 FFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSI 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,637
Number of Sequences: 5004
Number of extensions: 28830
Number of successful extensions: 94
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)