Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M15
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-15|AAC46646.1|  366|Caenorhabditis elegans Hypothetical p...   132   6e-32
D83739-1|BAA12092.1|  366|Caenorhabditis elegans aldolase Ce2 pr...   132   6e-32
Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical pr...   125   7e-30
D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1 pr...   125   7e-30
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    31   0.22 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    31   0.22 
AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical ...    30   0.38 
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    29   0.66 
U80840-10|AAB37926.2|  214|Caenorhabditis elegans Hypothetical p...    29   1.2  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical ...    26   6.1  
Z81528-7|CAB04286.1|  259|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    26   8.1  
AC006816-4|AAK85507.1|  239|Caenorhabditis elegans Smn (survival...    26   8.1  

>U13070-15|AAC46646.1|  366|Caenorhabditis elegans Hypothetical
           protein F01F1.12a protein.
          Length = 366

 Score =  132 bits (319), Expect = 6e-32
 Identities = 62/98 (63%), Positives = 75/98 (76%)
 Frame = +2

Query: 8   GVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGKEDNVPVGQQ 187
           G+TFLSGGQSE +A+ NLNAINSV L +PW LTFSYGRALQASVL+AW GK++N+   Q+
Sbjct: 270 GITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQASVLKAWGGKDENIAAAQK 329

Query: 188 ELIKRAKANGQASQGKYVAGSVTGLGAEAGLFVANHAY 301
            L+ R+KANG AS GKY      G  AE+ LFVA H+Y
Sbjct: 330 TLLHRSKANGDASLGKYAGEDAAGAAAES-LFVAKHSY 366


>D83739-1|BAA12092.1|  366|Caenorhabditis elegans aldolase Ce2
           protein.
          Length = 366

 Score =  132 bits (319), Expect = 6e-32
 Identities = 62/98 (63%), Positives = 75/98 (76%)
 Frame = +2

Query: 8   GVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGKEDNVPVGQQ 187
           G+TFLSGGQSE +A+ NLNAINSV L +PW LTFSYGRALQASVL+AW GK++N+   Q+
Sbjct: 270 GITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQASVLKAWGGKDENIAAAQK 329

Query: 188 ELIKRAKANGQASQGKYVAGSVTGLGAEAGLFVANHAY 301
            L+ R+KANG AS GKY      G  AE+ LFVA H+Y
Sbjct: 330 TLLHRSKANGDASLGKYAGEDAAGAAAES-LFVAKHSY 366


>Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical
           protein T05D4.1 protein.
          Length = 365

 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/98 (59%), Positives = 70/98 (71%)
 Frame = +2

Query: 8   GVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGKEDNVPVGQQ 187
           GV FLSGGQSEE+A++NLNAIN V  K+PW LTFSYGRALQAS L  WAGK++N+   Q+
Sbjct: 268 GVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQASCLAKWAGKDENIAAAQE 327

Query: 188 ELIKRAKANGQASQGKYVAGSVTGLGAEAGLFVANHAY 301
            L+ RA+ N  AS GKY   +     A   LFVANH+Y
Sbjct: 328 VLLHRAQVNSLASVGKYTGDASADAAASQSLFVANHSY 365


>D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1
           protein.
          Length = 366

 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/98 (59%), Positives = 70/98 (71%)
 Frame = +2

Query: 8   GVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGKEDNVPVGQQ 187
           GV FLSGGQSEE+A++NLNAIN V  K+PW LTFSYGRALQAS L  WAGK++N+   Q+
Sbjct: 269 GVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQASCLAKWAGKDENIAAAQE 328

Query: 188 ELIKRAKANGQASQGKYVAGSVTGLGAEAGLFVANHAY 301
            L+ RA+ N  AS GKY   +     A   LFVANH+Y
Sbjct: 329 VLLHRAQVNSLASVGKYTGDASADAAASQSLFVANHSY 366


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 214 VCLGTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQIDRVDSIQVNGSL 44
           +C   L E       ++L +GP  +    E  A A+R  P   QI RV+ I +NGS+
Sbjct: 79  ICSILLTENRSIRDKLVLSSGPVRQEDHEEQIARAQRIQPVVDQIQRVEQIILNGSV 135


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 214 VCLGTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQIDRVDSIQVNGSL 44
           +C   L E       ++L +GP  +    E  A A+R  P   QI RV+ I +NGS+
Sbjct: 79  ICSILLTENRSIRDKLVLSSGPVRQEDHEEQIARAQRIQPVVDQIQRVEQIILNGSV 135


>AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical
           protein F13B6.3 protein.
          Length = 432

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 291 LATKSPASAPKPVTDPATYFPWDACP---FALARLMSSCCP 178
           + T SPA+ PKP   P T  P   CP   F   R  ++ CP
Sbjct: 346 VTTSSPATTPKPTAKPTT-APECTCPPTTFPTTRAPNTACP 385


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 205 GTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQID--RVDSIQV-NGSLLFR 35
           G    FL+   N IL  GP   H S+ S+   ++QYP +L +   R  S+Q+ N S  F 
Sbjct: 215 GKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFA 274

Query: 34  LAT 26
             T
Sbjct: 275 YRT 277


>U80840-10|AAB37926.2|  214|Caenorhabditis elegans Hypothetical
           protein F08D12.2 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 273 ASAPKPVTDPATYFPWDACPFALARLMSSCCPTGTLSSLPAQA 145
           +SA K  T PA     DACP     +M+ CC    +  LPA++
Sbjct: 23  SSACKSPTGPAIL---DACPAGQVHIMNYCCLEEDVYELPAKS 62


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 276 PASAPKP----VTDPATYFPWDACPFALARLMSSCCPTGTLSSLPAQARSTEAWRA 121
           PA  PKP    V DP       A P A A   S   PT T  ++PA A S+ A ++
Sbjct: 286 PAVPPKPAKISVADPPPSTIAPAAPSAPAPAPSQLNPTSTSPTMPAIAPSSSALKS 341


>Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical
           protein T14G10.1 protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 242 PRIFLGTPVRLPWHA**VPAVQREHYPLCRPKHGARKPG 126
           P ++ G P  + WHA    A   +HY + R   G +KPG
Sbjct: 521 PMMYAG-PTEVQWHARSRIAAGIQHYIVGRDPAGIQKPG 558


>AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical
           protein C16C4.6 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 247 ISDRFGCRSRTLCC*PRVLKHTHTNKINT 333
           +++RF C  R   C P++L  +   KI+T
Sbjct: 11  VTNRFRCMGRARPCFPQILPGSRNKKIDT 39


>Z81528-7|CAB04286.1|  259|Caenorhabditis elegans Hypothetical
           protein F35E2.8 protein.
          Length = 259

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 317 VCVCFNTRG*QQRVRLRHP-NLSLIRPRIFL 228
           + VC N++  Q R  LRH  +L+ +R + FL
Sbjct: 60  IAVCINSKTSQSRFELRHNLDLAFLRIKFFL 90


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 288 ATKSPASAPKPVTDPAT 238
           AT SP SA  PVT+P T
Sbjct: 273 ATSSPQSAKTPVTNPTT 289


>AC006816-4|AAK85507.1|  239|Caenorhabditis elegans Smn (survival of
           motor neuron protein)related protein 1, isoform a
           protein.
          Length = 239

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 157 AGPSTEHGSLESAAVAERQYPGSLQ 83
           AGPST+HG  E  A  ER+   +L+
Sbjct: 133 AGPSTQHGKKEWQAEKERRRQKALK 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,423,137
Number of Sequences: 27780
Number of extensions: 171788
Number of successful extensions: 500
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)