Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M14
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.5  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   4.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   6.2  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    24   8.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    24   8.2  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -1

Query: 356 SEHEDEPEATSDQEQDEVLFDDTADSTLGEDE 261
           S+ E++ E ++D+E +E    + ++S+L +DE
Sbjct: 231 SDDEEDEEGSADEEDEEDSDVELSESSLSDDE 262


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDE 261
           D EH++EP+  +D+       DD A    GE+E
Sbjct: 80  DLEHDEEPQTFADE-----FIDDEAKECEGEEE 107


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 356 SEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQVEY 249
           S +    +++   +QD+ ++DDT D T  +    EY
Sbjct: 197 SNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEY 232


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 359 DSEHEDEPEATSDQEQDE 306
           +SE E+  E+ SD+++DE
Sbjct: 240 ESEEEESSESESDEDEDE 257


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 353 EHEDEPEATSDQEQDEVLFDDTADSTLGEDE 261
           E+E+E +A  ++E+DE   +D  +    EDE
Sbjct: 102 ENEEEADANEEEEEDE---EDDEEDEEDEDE 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,858
Number of Sequences: 5004
Number of extensions: 8916
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)