Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M14
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0131 + 18290201-18290650,18291474-18291626,18291950-182920... 29 1.5
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 28 1.9
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 28 1.9
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504... 27 3.4
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 27 4.4
10_03_0006 + 6929237-6929304,6929581-6929603,6929609-6929710,692... 27 5.9
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 27 5.9
08_01_0626 - 5445676-5446687,5447099-5447430 27 5.9
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 27 5.9
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653... 26 7.7
>05_04_0131 +
18290201-18290650,18291474-18291626,18291950-18292042,
18292285-18292313,18292702-18292795,18292941-18293153
Length = 343
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQVE 252
DSE E+ +T++++++E D+T ST+ E E+ E
Sbjct: 93 DSEPEETSRSTTEEKKEENKPDETPPSTVTEPEEDE 128
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 356 SEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQVE 252
SE EDE + D+E +E+ DD D E+E+ E
Sbjct: 121 SEEEDEEDGEGDEELEEL--DDVDDEEESEEEEEE 153
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -1
Query: 350 HEDEPEATSDQEQDEVLFDDTADS------TLGEDEQVEY 249
HEDE ++ + + + L+D TA T GED ++EY
Sbjct: 1074 HEDEDRSSGNPQSGKALYDFTAGGDDELSLTAGEDVEIEY 1113
>01_05_0167 +
18849791-18849973,18850081-18850250,18850341-18850413,
18850729-18850839,18850947-18850992,18851085-18851148,
18851810-18851912,18851999-18852094,18852186-18852215,
18852434-18852533,18852761-18852845,18852965-18853088
Length = 394
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQVE 252
DSE E++ E D+E+DE DD + ED++ E
Sbjct: 66 DSEEEEQEEREMDEEEDEE--DDDDEEMNEEDDEDE 99
>05_05_0334 +
24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQ 258
D E ++E E + E+D + DD + EDE+
Sbjct: 39 DDEEDEEDEGQDEYEKDGFIVDDADEEEEEEDER 72
>10_03_0006 +
6929237-6929304,6929581-6929603,6929609-6929710,
6929752-6930207,6930237-6930538,6930628-6930717,
6931379-6931471
Length = 377
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQV 255
D E EDE ATS+ E ++ DD + + EDE +
Sbjct: 215 DKESEDESWATSEDEPEDASEDDGVNES--EDESM 247
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 271 GKMSKLNMQQMNHRN*QIQKLIMKQKMMRMSTK 173
G+MSK QQMN + Q+Q+L ++Q+ +T+
Sbjct: 421 GRMSKGLQQQMNSQLIQLQQLQIQQQQSSQTTQ 453
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQVE 252
D E E E + ++++DE DD + + EDE ++
Sbjct: 223 DDEDEGEEDEEIEEDEDENNDDDDEEEEMEEDEDLD 258
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 359 DSEHEDEPEATSDQEQDEVLFDDTADSTLGEDEQVE 252
D++ E +PE T+D E + TAD +++ E
Sbjct: 497 DTDSETDPEETTDLEGSDTAVGATADHCASDEQDEE 532
>11_06_0500 +
24362627-24362828,24363046-24363704,24364958-24365300,
24366227-24366645
Length = 540
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 359 DSEHEDEP--EATSDQEQDEVLFDDTADSTLGEDE 261
DSE ED+P + D EQD+ +D D D+
Sbjct: 497 DSEEEDDPVSDDDDDDEQDDFFTNDDDDDQQNVDQ 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,863,099
Number of Sequences: 37544
Number of extensions: 55301
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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