Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M13
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 226 6e-60
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 222 1e-58
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 222 1e-58
01_01_1101 + 8731427-8732938 29 1.3
12_01_0337 - 2591689-2593839 28 4.0
10_08_0610 - 19209484-19210068 28 4.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.0
04_04_0950 + 29609484-29611025 27 5.3
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 7.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 7.0
08_02_0803 + 21390525-21391066,21391799-21391958 27 9.2
03_06_0106 - 31682200-31682775 27 9.2
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 27 9.2
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 226 bits (553), Expect = 6e-60
Identities = 104/147 (70%), Positives = 119/147 (80%)
Frame = +1
Query: 10 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 189
RG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+
Sbjct: 19 RGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVI 78
Query: 190 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 369
I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+K
Sbjct: 79 SILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFK 138
Query: 370 LCKVRRVATGPKSVP*LVTHDGRTLRY 450
LCKVR V G K +P L T+DGRT+RY
Sbjct: 139 LCKVRSVQFGQKGIPFLNTNDGRTIRY 165
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 222 bits (542), Expect = 1e-58
Identities = 100/147 (68%), Positives = 119/147 (80%)
Frame = +1
Query: 10 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 189
RG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVI 62
Query: 190 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 369
I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+K
Sbjct: 63 SILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFK 122
Query: 370 LCKVRRVATGPKSVP*LVTHDGRTLRY 450
LCKVR V G K +P L T+DGRT+RY
Sbjct: 123 LCKVRSVQFGQKGIPYLNTYDGRTIRY 149
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 222 bits (542), Expect = 1e-58
Identities = 100/147 (68%), Positives = 119/147 (80%)
Frame = +1
Query: 10 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 189
RG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+
Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVI 62
Query: 190 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 369
I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+K
Sbjct: 63 SILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFK 122
Query: 370 LCKVRRVATGPKSVP*LVTHDGRTLRY 450
LCKVR V G K +P L T+DGRT+RY
Sbjct: 123 LCKVRSVQFGQKGIPYLNTYDGRTIRY 149
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 189 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 55
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 434 PSCVTSYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 306
P C ++Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>10_08_0610 - 19209484-19210068
Length = 194
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -1
Query: 447 PERAPVVRHQLRHALGAGRDAPHLAQLVLGFFRC---DTVDSEPSFHIIY*TE*LICFLN 277
P+ V+ +L +G GRD L F RC +T+ P I+ C +
Sbjct: 8 PDDLRRVQEELAAVVGLGRDVAESDLDKLPFLRCVIKETLRLHPPIPILLHETAADCLVA 67
Query: 276 GYNVHKSRRV 247
GY+V + RV
Sbjct: 68 GYSVPRGSRV 77
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 298 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 402
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 203 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 75
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 221 TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 379
+GK L R +RDL L RK S ++ + K L + K + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 113 LWGPVEGRGAYTPPSLSNIHALGAFKR 33
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 179 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 72
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>03_06_0106 - 31682200-31682775
Length = 191
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 344 SHLKKPSTSCARCGASRPAPRACRSW*RTTGARSG 448
SH P SC AS P PR+ + TT R G
Sbjct: 118 SHSSAPPRSCWTLTASHPPPRSAAGFALTTPFRVG 152
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 448 TGACARRASPATARSWGRSRRAAPCTACT 362
T A ASP T+ WGR R +AP TA +
Sbjct: 1068 TSTTAAGASPTTSSIWGR-RPSAPRTAAS 1095
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 109 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 249
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,097
Number of Sequences: 37544
Number of extensions: 292914
Number of successful extensions: 938
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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