Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M13
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 154 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 255
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 7   GRGPKKHLKRLNAP 48
           G GPK+HL+ L  P
Sbjct: 334 GIGPKEHLRSLGIP 347


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 435 PVVRHQLRHALGAGRDAPHLAQLVL 361
           P++R +L  ALG    +   A+L+L
Sbjct: 560 PIIRRKLGSALGGWHPSDRSARLML 584



 Score = 21.4 bits (43), Expect = 4.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 172 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 330
           T +++    + R+ ++   VRT    P GF D+V  +K  E   L   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 196 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 315
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,710
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)