Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M12
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 46 1e-06
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 34 0.008
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.22
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 26 1.6
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 25 4.8
SPAC1782.03 |||microfibrillar-associated protein family protein|... 24 6.3
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 24 6.3
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 24 6.3
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 24 8.3
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 24 8.3
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 46.4 bits (105), Expect = 1e-06
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Frame = +3
Query: 24 LTESNAIAYYVANDD----LRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFN 191
L+E+ AIA+Y+A+ + L G +A+VLQ+ S+ +SEL A + P + ++
Sbjct: 63 LSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYD 122
Query: 192 KQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLHAFQHVL 347
+Q + A+ S+T+LV R+TLADI L +VL
Sbjct: 123 EQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVL 174
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 33.9 bits (74), Expect = 0.008
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 93 QARVLQWASWADSELL-PASCA-WVFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSR 266
+A +L+W + + +++ P + WV + G + + ++ + + R
Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152
Query: 267 TFLVTERITLADIIVYSTLLHAFQHVLDPTVR 362
T+LV +R TLAD+ S L F ++D R
Sbjct: 153 TYLVGDRFTLADLFFGSLLRIFFNSIIDEKTR 184
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.22
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +1
Query: 70 CEVETWQHRH---VCCNGPHGLTVNC 138
C+ TW +H VCC+GP+ L +C
Sbjct: 11 CQFLTWNSKHNYIVCCSGPYLLGFSC 36
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 1.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 149 LRMGLSIFRHHAVQQTECRACKE*FTGCTATSGWTSFEPHFPGHGEDYSCRYYRLQH 319
L G+S + + + FT +++ TSF F GHG D +Y R QH
Sbjct: 22 LHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCR-QH 77
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 24.6 bits (51), Expect = 4.8
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = +3
Query: 48 YYVANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFNKQNVERAKN 218
Y +A L DL ++ W + L P + W+ PYL + + V N
Sbjct: 106 YGLAKPKLALADLGILTGLVGWLAKTWWPLAPTASKWLIPYLAWLGYAGYLVSNVTN 162
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 78 GDLATQARVLQWASWADSELLPASCAWVFPYLGIMQFN 191
GDL +A +W A+ + AW P I+Q N
Sbjct: 299 GDLFAKAGQTRWTHLANEDTTKEGSAWYDPKNPILQKN 336
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 338 LESMQQRAVDDNICKSNPLRDQESAAQKMSIQK 240
LES + A +D S +ES AQ+ +QK
Sbjct: 86 LESAESEAENDEESSSQKSNSKESHAQRKKLQK 118
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 6.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 133 NCCRHPAHGSFHI 171
NCCRHP+ +I
Sbjct: 96 NCCRHPSEACLYI 108
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 23.8 bits (49), Expect = 8.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 299 CKSNPLRDQESAAQKMSIQKLQCSQ*IILCTLYILFVELH 180
C L QES + I KL+CS + TLY L +L+
Sbjct: 63 CVLQSLASQESL---LEILKLRCSSSTLYATLYELLQKLN 99
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 39 AIAYYVANDDLR--GGDLATQARVLQWASWADSEL 137
++A + + DL+ G +A + + +W SW +S L
Sbjct: 192 SVADQIEDTDLKFLPGSVAKMSNIEEWISWMESAL 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,444
Number of Sequences: 5004
Number of extensions: 30045
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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