Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M12
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 52 1e-07
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 48 2e-06
10_01_0130 + 1540412-1541173 31 0.37
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189 30 0.64
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460... 30 0.64
02_04_0542 - 23762549-23762961,23763051-23763453 29 1.1
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 29 1.5
02_02_0026 + 6187860-6187940,6188136-6188207,6188302-6188395,618... 28 2.0
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 2.6
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 28 2.6
11_06_0584 - 25220371-25222917 27 3.4
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 27 6.0
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 27 6.0
04_04_1245 - 32036929-32037042,32037152-32037208,32037299-320373... 27 6.0
02_04_0266 - 21415912-21418563 27 6.0
12_02_1193 + 26891619-26892456,26892545-26893884 26 7.9
09_02_0178 + 5399982-5400048,5400421-5400518 26 7.9
03_06_0690 - 35571816-35572586 26 7.9
03_02_0878 + 12088119-12088233,12088511-12088608,12088689-120887... 26 7.9
03_02_0837 - 11640169-11640447 26 7.9
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 52.4 bits (120), Expect = 1e-07
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +3
Query: 3 TGDGKVLLTESNAIAYYVA----NDDLRGGDLATQARVLQWASWADSELLPASCAWVFPY 170
T +G V ESNAIA YVA N L G L + + QW ++ +E+ W++P
Sbjct: 83 TPEGAVF--ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPR 140
Query: 171 LGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTLLHAFQHVL 347
LG + E A S T+LV +TLADI++ L + F +L
Sbjct: 141 LGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRIL 199
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 48.0 bits (109), Expect = 2e-06
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Frame = +3
Query: 3 TGDGKVLLTESNAIAYYV-------------ANDDLRGGDLATQARVLQWASWADSELLP 143
T DG V ESNAIA YV A++ L G L A + QW ++ +E+
Sbjct: 59 TPDGPVF--ESNAIARYVLSHCHFPEVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDA 116
Query: 144 ASCAWVFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTL 323
W++P LGI + + E A S T+LV +TLADI++ L
Sbjct: 117 NIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNL 176
Query: 324 LHAFQHVL 347
F ++
Sbjct: 177 YMGFARIM 184
Score = 48.0 bits (109), Expect = 2e-06
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Frame = +3
Query: 3 TGDGKVLLTESNAIAYYV-------------ANDDLRGGDLATQARVLQWASWADSELLP 143
T DG V ESNAIA YV +++ L G L A + QW ++ +E+
Sbjct: 620 TPDGPVF--ESNAIARYVLSSSHFPEVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDA 677
Query: 144 ASCAWVFPYLGIMQFNKQNVERAKNXXXXXXXXXXXXXXSRTFLVTERITLADIIVYSTL 323
+ W+FP LG + + E A S T+LV +TLADI++ L
Sbjct: 678 NTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNL 737
Query: 324 LHAFQHVL 347
F ++
Sbjct: 738 YMGFARIM 745
>10_01_0130 + 1540412-1541173
Length = 253
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 265 RLKRCPSRSCSAASKSFFARSTFCLLNCMMPK 170
R +R PS + +AASK +FA FC+ PK
Sbjct: 203 RGRRRPSPAAAAASKMYFAFCPFCVAKAAQPK 234
>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
Length = 269
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 113 PLQHTCLCCQVSTSQVIICHVVSDSI 36
P HT LC + T+ V +CH VSDS+
Sbjct: 165 PSSHTALCTAL-TASVALCHGVSDSL 189
>02_01_0615 -
4604373-4604537,4604618-4604707,4604871-4604989,
4605132-4605234,4605318-4605414,4605512-4605575,
4605673-4605805,4605899-4606143,4606263-4606439,
4607110-4607419
Length = 500
Score = 29.9 bits (64), Expect = 0.64
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 235 SAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLS 125
S++S+ FF +L+C +P G+TH A ++S S
Sbjct: 11 SSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPS 47
>02_04_0542 - 23762549-23762961,23763051-23763453
Length = 271
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 229 ASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLSAHEAHCN 104
A+K F+ R F P +G+T + D ++A AH N
Sbjct: 89 AAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHAN 130
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 261 SRTFLVTERITLADIIVYSTL 323
SRTFLV+ +++ADI+V+S L
Sbjct: 108 SRTFLVSYGLSIADIVVWSNL 128
>02_02_0026 +
6187860-6187940,6188136-6188207,6188302-6188395,
6188480-6188640,6189053-6189123,6189231-6189312,
6189748-6189849,6189972-6190027,6190278-6190312,
6191495-6191579,6191658-6191717,6191819-6191858,
6192415-6192468
Length = 330
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 172 KYGKTHAQDAGSSSLSAHEAHCNTRACVARSPP 74
+YG + SLS H A CN R SPP
Sbjct: 39 QYGVVFITHSAHQSLSTHLADCNVRYMPVSSPP 71
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 193 LLNCMMPKYGKTHAQDAGSSSLSAHEAH 110
LLN ++P YG TH +D+ S S H
Sbjct: 59 LLNEVLPFYGNTHTEDSHVGSKSTRLVH 86
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 261 SRTFLVTERITLADIIVYSTL 323
SRTFLV +T+ADI V+S L
Sbjct: 106 SRTFLVGHVLTIADITVWSNL 126
>11_06_0584 - 25220371-25222917
Length = 848
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 286 LSVTRKVRLKRCPSRSCSAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLS 125
+++ + R + P + K + +ST C C +P+ K DAG S+++
Sbjct: 386 INIRKTARRRELPQKQHQ--HKLRWTQSTICCCYCRVPRIMKATTADAGGSNIN 437
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 178 MPKYGKTHAQ-DAGSSSLSAHEAHCNTRA 95
+ +YG+T + DAG+ SA EA NTRA
Sbjct: 105 LQQYGRTGSHLDAGNPPPSAGEAETNTRA 133
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 187 NCMMPKYGKTHAQDAGSSSLSAHEAHCNTRACVA-RSPPRRSS 62
N K GK+ ++ S H+ CN VA R PP+ ++
Sbjct: 301 NSSHSKKGKSKTKECSCGSARKHKPSCNLATTVASREPPKTTA 343
>04_04_1245 -
32036929-32037042,32037152-32037208,32037299-32037375,
32037479-32037563,32037615-32037684,32038007-32038068,
32038249-32038336,32038685-32038815,32039182-32039213,
32039377-32039489,32039741-32040045,32040148-32040233,
32040350-32040425,32041002-32041097
Length = 463
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 57 ANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYLGIMQF 188
AN + GDL + ++L A + +++ A C++ F ++G ++F
Sbjct: 61 ANKEFAEGDLILKDQILVGAQHSLNKIDCAVCSYCFRFIGSIEF 104
>02_04_0266 - 21415912-21418563
Length = 883
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 314 VDDNICKSNPLRDQESAAQKMSIQKLQ 234
+D N+C LRD+ +A K+ I KL+
Sbjct: 299 LDGNLCMVRDLRDRSTAVCKLEIWKLK 325
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 12 GKVLLTESNAIAYYVANDDLRGGDLATQARVLQWASWADSELLPASCAWVFPYL 173
GK + E++A Y + GD T+A +L + + +LPAS +F L
Sbjct: 608 GKRAVAETSASEYSLWVPRFAPGDFETRADLLHFVEGVSNLVLPASAPSLFTEL 661
>09_02_0178 + 5399982-5400048,5400421-5400518
Length = 54
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 278 HGEDYSCRYYRLQHAAACFPTCVGSD 355
H + C Y+RL+ C C GSD
Sbjct: 20 HPQGCRCCYFRLRPMIQCAKACCGSD 45
>03_06_0690 - 35571816-35572586
Length = 256
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 249 HPEVAVQPVNHSLHALH 199
HPE A+ P+NHS A H
Sbjct: 94 HPEDALDPLNHSSAAAH 110
>03_02_0878 +
12088119-12088233,12088511-12088608,12088689-12088795,
12088900-12088974,12089053-12089124,12089221-12089382,
12089476-12089550,12089635-12089706,12089813-12089884,
12090150-12090224,12090329-12090400,12090491-12090625,
12090712-12091187,12091270-12091779,12091876-12092111,
12092200-12092712
Length = 954
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 141 PASCAWVFPYLGIMQF 188
P SCA +PY G+M F
Sbjct: 425 PQSCACAYPYQGVMYF 440
>03_02_0837 - 11640169-11640447
Length = 92
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 69 LRGGDLATQARVLQWASWADSELLPASCAW 158
+R GD T+ RV+ SW + L P SC++
Sbjct: 42 VREGDEETKQRVVVVVSWLLAPLQPHSCSY 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,566,865
Number of Sequences: 37544
Number of extensions: 244504
Number of successful extensions: 668
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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